Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g00061 ATGGATCAAGCCGAGTTAACCACGGAGCAGGTTCTCAAGAGGGACATCCCATGGGAGACTTACATGACAACTAAGCTGATCACAGGAACATGCCTTCAGTTGTTAAGGCGTTATGATAACAGATCTGAGAGCTACCGAGCAGCACTGCTTGACGAAGATGGTCCAGCTTACGTTCGGGTCTTTGTTAACATTTTGCGTGATATATTAAAGGAAGAAACTGTGGAATATGTTCTAGCTCTTATCGATGAAATGCTCACAGCAAACCCAAAACGGGCCAGACTATTCCATGACAAATCTCTTGCAAATGAAGATACTTATGAACCTTTTTTAATTATGACGCTAGTAAAACAAGTTTCCTTGCATTTCAATTGCCAAAAAACTAAACAAATCGCATTCTTGTTCATTTTCAGGTTGCTTTGGAATGGTAACTGGTTCATACAAGAGAAGAGCTGTAAGATACTGTCTTTGATAGTAAGTGCTAGACCAAAAATCCAGGACAAAATTATTGCAAATGGAGAAGCCTCGCATTCGAAGAACAAGTTTACTACTATTGATGATGTATTGAAAGGATTGGTGGAGTGGCTTTGCGCTCAACTGAAGAAGCCTTCCCATCCTTCTCGTGGCATCCCAACTGCTATCAGTTGCCTAGCAACTTTGCTGAAGGAACCCTTAGTCAGATCTTCATTTGTACAAGCAGATGGGGTGAAGATGCTCATTCCATTGATTTCTCCAGCATCTAGTCAGCAATCTATTCAGCTCCTGTACGAAACGTGCCTCTGTGTCTGGCTCTTGTCCTACTATGAGCCTGCAGTGGAGTACCTGGCTACTTCTAGGACCCTGCCACGACTGGTGGAGGTCATTAAAGGTTCCACAAAGGAGAAGGTTGTGAGGGTTGTTGTCTTAACCCTTAGGAACTTGCTTTCCAAAGGGACATTTGGTGCTCAGATGGTAAACCTTGGATTGCCGCAAATTGTTCAGAGTTTGAAAGCGCAGGCATGGAGTGATGAGGATCTGTTGGAGGCTCTGAATCAACTGGAAGAGGGGCTTAAAGATAATATTAAGAAACTGAGTTCTTTTGACAAGTACAAGCAGGAAGTTCTTCTTGGCCATCTTGATTGGTCGCCCATGCACAAAGATCCAAATTTCTGGCGTGAAAATATTACAAACTTCGAGGAGAATGATTTCCAGATTCTACGGGTCCTCATAACGATCCTTGACACATCCAGCGATCCTAGGGCACTCGCTGTTGCCTGCTATGATCTCTCACAGTTCATCCAGTACCATCCTGCAGGGCGGATCATAGTGACTGATCTCAAGGCTAAGGAGAGGGTGATGAAGCTGATGAATCACGAGAACGCGGAGGTTACAAAGAATGCCCTTCTCTGTATCCAGAGGCTTTTTCTCGGTGCAAAATCTTTTCCCGAAGCTGTTCTTGTTCATAGATGGGTTTCGACTTACCATATCATGCGTATGTTGATTCTGGGCTTGAAAGTAAGATAG 1500 0.438 MDQAELTTEQVLKRDIPWETYMTTKLITGTCLQLLRRYDNRSESYRAALLDEDGPAYVRVFVNILRDILKEETVEYVLALIDEMLTANPKRARLFHDKSLANEDTYEPFLIMTLVKQVSLHFNCQKTKQIAFLFIFRLLWNGNWFIQEKSCKILSLIVSARPKIQDKIIANGEASHSKNKFTTIDDVLKGLVEWLCAQLKKPSHPSRGIPTAISCLATLLKEPLVRSSFVQADGVKMLIPLISPASSQQSIQLLYETCLCVWLLSYYEPAVEYLATSRTLPRLVEVIKGSTKEKVVRVVVLTLRNLLSKGTFGAQMVNLGLPQIVQSLKAQAWSDEDLLEALNQLEEGLKDNIKKLSSFDKYKQEVLLGHLDWSPMHKDPNFWRENITNFEENDFQILRVLITILDTSSDPRALAVACYDLSQFIQYHPAGRIIVTDLKAKERVMKLMNHENAEVTKNALLCIQRLFLGAKSFPEAVLVHRWVSTYHIMRMLILGLKVR* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g00061 499 PIRSF V-ATP_synth_H 1 473 IPR004908 GO:0000221|GO:0046961|GO:1902600
Eupl12g00061 499 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 424 431 IPR018506 GO:0020037
Eupl12g00061 499 Pfam V-ATPase subunit H 4 112 IPR004908 GO:0000221|GO:0046961|GO:1902600
Eupl12g00061 499 Pfam V-ATPase subunit H 119 349 IPR004908 GO:0000221|GO:0046961|GO:1902600
Eupl12g00061 499 PANTHER V-TYPE PROTON ATPASE SUBUNIT H 1 470 IPR004908 GO:0000221|GO:0046961|GO:1902600
Eupl12g00061 499 Pfam V-ATPase subunit H 355 467 IPR011987 GO:0000221|GO:1902600
Eupl12g00061 499 FunFam V-type proton ATPase subunit H 369 470 - -
Eupl12g00061 499 SUPERFAMILY ARM repeat 8 468 IPR016024 -
Eupl12g00061 499 Gene3D - 4 357 IPR011989 -
Eupl12g00061 499 Gene3D - 369 470 IPR038497 -
Eupl12g00061 499 SMART arm_5 428 468 IPR000225 GO:0005515
Eupl12g00061 499 SMART arm_5 221 266 IPR000225 GO:0005515
Eupl12g00061 499 SMART arm_5 267 308 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g00061 Eupl-Chr12 1690940 1737748 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g00061 1 476 Primary Pumps ATPases(2) AT3G42050 76.151 0.0 746
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g00061 K02144 - nnu:104593320 803.512