Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g00052 ATGGGAGGAGAAGAAGAAAAGATGATGAGCTCGTGCTTACAAATGGGGACACAACCGATGATCACCGTCAATCATACGTTGGACGGTAAAGATCCTTCTCGTGCTGGGGTGAAGACGCGAGGGCTTGAGATCGACATGAACGAGATTCCAAAGGAAAGCAGAGAAAATCTAAATCTGAACGAAGAAGAAGAAGAGGAAGAAGAAGACGAAGAAGAAAGAGGAGGAGAATGCGAAAGTAATGGTGCGATGAAGAGAAAGAAGCTTCGGCTCACCACCCAACAGTCAGCAAGTCTCGAAGACTCTTTCAAACAACACAACACTCTCTGCCCGAAGAAGAAAATTGAACTAGCAAAGCAGTTGAATCTGAAGCCTCGGCAAGTTGAGGTCTGGTTCCAAAATCGAAGAGCCAGAACGAAACTAAAGCAAACAGAGATCGACTATGAATACTTCAAGCAATGTTGTGAAACTTTAACTAAAGAGAACAGGAAGCTCCAAAGAGAGCTGATGGAGCTGCGTGCACTAAAACGACAACCCCATTTTTACATGCGTGTTCCGGCAACGACACTTGCTGTATGCCCAGCGTGCGAAAGAGATGCCTGCACTTCATGCGAAAGAGATACTCTATTCGAAATCCCTACTGCAGTCCCCTTTTGTACACAGATCAGATCAAACCATGAGCTACCTGAATCCTAG 693 0.4545 MGGEEEKMMSSCLQMGTQPMITVNHTLDGKDPSRAGVKTRGLEIDMNEIPKESRENLNLNEEEEEEEEDEEERGGECESNGAMKRKKLRLTTQQSASLEDSFKQHNTLCPKKKIELAKQLNLKPRQVEVWFQNRRARTKLKQTEIDYEYFKQCCETLTKENRKLQRELMELRALKRQPHFYMRVPATTLAVCPACERDACTSCERDTLFEIPTAVPFCTQIRSNHELPES* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g00052 230 SMART halz 141 184 IPR003106 GO:0006355|GO:0043565
Eupl12g00052 230 Coils Coil 154 177 - -
Eupl12g00052 230 SMART HOX_1 83 145 IPR001356 GO:0003677
Eupl12g00052 230 MobiDBLite consensus disorder prediction 23 90 - -
Eupl12g00052 230 CDD homeodomain 84 142 IPR001356 GO:0003677
Eupl12g00052 230 ProSitePatterns 'Homeobox' domain signature. 116 139 IPR017970 GO:0000981|GO:0006355
Eupl12g00052 230 ProSiteProfiles 'Homeobox' domain profile. 81 141 IPR001356 GO:0003677
Eupl12g00052 230 SUPERFAMILY Homeodomain-like 77 142 IPR009057 -
Eupl12g00052 230 MobiDBLite consensus disorder prediction 59 75 - -
Eupl12g00052 230 Coils Coil 49 80 - -
Eupl12g00052 230 Pfam Homeobox associated leucine zipper 141 175 IPR003106 GO:0006355|GO:0043565
Eupl12g00052 230 Gene3D - 81 146 - -
Eupl12g00052 230 Pfam Homeodomain 84 139 IPR001356 GO:0003677
Eupl12g00052 230 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 53 199 - -
Eupl12g00052 230 MobiDBLite consensus disorder prediction 44 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g00052 Eupl-Chr12 1393480 1396026 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g00052 17 215 Homeobox Transcription Factor Family AT5G47370 47.500 1.76e-53 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Eupl12g00052 Homeodomain 2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g00052 K09338 - nnu:104593658 203.756