Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g00027 ATGGACTTGGTTGCTAAGATCTTGGAGGCCCTTCTCATGATGTGTCATGTCGAGGAAGCCCTTGGACTAATTGAGCTATTGATGAATAATGACTGTATTCCTGATTTTGATCGTCTTTTAGTCGTTCTATGTGAGAAAGAGAAGACAATCGCCGCTCTCAAGTTGTTTGATTTTGGGTTGGAGAGGGATTGTAACATAAGTTTTTCAAGCTATGATAAGGTTTTGGATGCACTTTTAGCAGTGAGAAAGACCCTCAATGCACATTCGATGTTGTGTAAGATAATAGAGAAGGGTGGGGTCACAGATAAGATTAGCTGTGAGGATTTGACCAGAAGCCTCAATGCGGAGGGGAGTACGAAGCAAGCGGATATCTTGTCGAGAATGATAATGGGAGGATACATTTACACACAAAAGTATGCAGATACTGAAGTGGTTTCCCATGGGCGGGTAATTTATGACAAGATGACTGATAGAAGTCGTGGATTTGGGTTTGTGACCATGTCTACAGTCAAGGAAGTCAAAGCAGCAAAGCAACAGTTCGATGGCTATGAACTCGAAGGGCAGCTATTGAGGGTGAACTCCGGACCTCCTTCTCGCAAGAAGATTCATCTCTTAGGGGATCCAGAGGTGAAGCAAGTTTTGGTGCTTCTAGCCGGGTACACGTGGGTAACCTTTCACCGGACCCTGTTAAGCAAGAAAGGAAAGGTTATGGAGGCCAAGGTGGTGTACGAGAGGGAGAGTGGTAGGTCAGGAGGTTTCGAGTTCGTCACTTACAACTCTGCTGAGGAGGTTAACAACGCAATTTCATCCCTAAATGGAGTTGGCGCCAATTTTGACCCATGGATCTTTCCAGATTTCTTCAATCAAGAAAGCGGTTATGGTAAGGTGGTGATAGCTATGATTTGGGTTAGGGGTTTGGGTGCTGGAGTCCTAAAGGGGACAGCAGCAGGTTCATTATTGGGACAGGTGTTGACGTCAATGGAGGAAAGGGAAGAGGAGGATGACTTGCAGGTCTAG 1017 0.4553 MDLVAKILEALLMMCHVEEALGLIELLMNNDCIPDFDRLLVVLCEKEKTIAALKLFDFGLERDCNISFSSYDKVLDALLAVRKTLNAHSMLCKIIEKGGVTDKISCEDLTRSLNAEGSTKQADILSRMIMGGYIYTQKYADTEVVSHGRVIYDKMTDRSRGFGFVTMSTVKEVKAAKQQFDGYELEGQLLRVNSGPPSRKKIHLLGDPEVKQVLVLLAGYTWVTFHRTLLSKKGKVMEAKVVYERESGRSGGFEFVTYNSAEEVNNAISSLNGVGANFDPWIFPDFFNQESGYGKVVIAMIWVRGLGAGVLKGTAAGSLLGQVLTSMEEREEEDDLQV* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g00027 338 Gene3D - 227 279 IPR012677 -
Eupl12g00027 338 SUPERFAMILY RNA-binding domain, RBD 146 273 IPR035979 GO:0003676
Eupl12g00027 338 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 188 273 IPR000504 GO:0003723
Eupl12g00027 338 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 93 197 IPR000504 GO:0003723
Eupl12g00027 338 SMART rrm1_1 212 285 IPR000504 GO:0003723
Eupl12g00027 338 SMART rrm1_1 103 193 IPR000504 GO:0003723
Eupl12g00027 338 Gene3D - 107 206 IPR012677 -
Eupl12g00027 338 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 227 273 IPR000504 GO:0003723
Eupl12g00027 338 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 145 190 IPR000504 GO:0003723
Eupl12g00027 338 PANTHER OS02G0815200 PROTEIN 145 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g00027 Eupl-Chr12 843335 847600 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g00027 149 274 Eukaryotic Initiation Factors Gene Family AT1G49760 28.030 1.27e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g00027 - - tss:122664549 209.149