Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g00024 ATGGCGTCGGCGTCCAATTCTCCTTGTGCAGCTTGCAAGTTTCTCCGGCGCAAATGCCAGACAGAATGTGTGTTCGCTCCCTACTTCCCACCAGATCAGCCCCAGAAGTTTGCCAATGTTCACAAGGTGTTTGGTGCAAGCAATGTCACGAAGCTTCTCAATGAGCTTCACCCACACCAGCGTGAGGATGCCGTTAATTCCCTTGCTTACGAGGCCGACATGCGCCTCCGTGACCCCGTTTACGGTTGCGTCGGCGTCATCTCCCTTCTCCAGCGCCAACTCCGTCAACTCCAAATGGATCTTAGTTGTGCCAAGTCTGAACTCTCTAAGTACCAGAATCTTGGCATCACAGGTCATGGCCTTATCGCCGCTGCCGCTGCTGCTGCCGCCACCCACAATCACCCACATATGGGAATGAGCCTCGTAACCGGCCGCGACCACCACCAATTTTTCTCTAGGGATCAACAGCAGGTTCTTAGGAGTTTCGATACTAACACTCCCTACGATGCCACCCTTGTCACCATGAATGTATCCACAAGCATTGGGCAGTTGGGTCAGTTCCAGCAACCCCGAGCCGCCGGAGTCGACCATTGCCGTAGCATCGGGCCCTCTTTGGATTACTCACTCCATGGATCACATACCTAA 645 0.5395 MASASNSPCAACKFLRRKCQTECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPHQREDAVNSLAYEADMRLRDPVYGCVGVISLLQRQLRQLQMDLSCAKSELSKYQNLGITGHGLIAAAAAAAATHNHPHMGMSLVTGRDHHQFFSRDQQQVLRSFDTNTPYDATLVTMNVSTSIGQLGQFQQPRAAGVDHCRSIGPSLDYSLHGSHT* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g00024 214 ProSiteProfiles LOB domain profile. 7 108 IPR004883 -
Eupl12g00024 214 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 149 - -
Eupl12g00024 214 Coils Coil 87 114 - -
Eupl12g00024 214 Pfam Lateral organ boundaries (LOB) domain 8 105 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g00024 Eupl-Chr12 769496 772990 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g00024 2 204 AS2 family AT1G65620 65.278 1.88e-79 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Eupl12g00024 LOB 7e-43 No_clan