Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Eupl11g01707 | ATGATGAGCCAACTCATCGATCCATGTCAAAGTCTTTCAAAGTTCGCGCGATTTCTGTGGCGCCAAATACAAAACTTTCATTTCCCTTTTCTTTTAAAGCCGCCAAAACATTCGAACTCAAAAGTGATCAACTCTTCATTCACTCTCTCCATTCATCTGTCTCTGTGTCTCTGTAAAAGATTAAAAATGGCGGGTGCATCGTCGAAATCGAACCCTCCAAGAACACGAAAGAGGGTAGAAGTCGAGACAAATTCGTTAAAACGCGCCAAGGATGGAAGTGCTTTCACCAGATGTGAAGAATGTAAAAAAGATGTACCAGTGGTTCTAATTGATATGCACAATTGCAGCCTTGATTCTAAGATAAAGATGAATTTGGAGGCTCTGGTTGTTGAAAAGGTTGAAGAAGCTAAAAAACCAGCAGTAAGGAAGAAAGTGGTGTCATTAGAACAAAAATCAAAGAAGAGTAGTAAAAAAGAGAAGAAAGTGAAGGATCCCAATATGCCTAAGCGTCCTCCAACAGCTTTCTTCCTCTTCATGGATGATTTTAGAAAATTGTACAAGGAAGCAAATCCAGACTCAAAGAGTGTTGCAGTGGTTGCAAAGGAAGGTGGTGAGAAATGGAAATCTATGACAGAAGAAGAGAAAAAATCTTATATGGATAGAGTTGTGGAACTGAAGGCAGAGTATGAGAAGGCAATGGAGAAATTCAATGCAGAAAATGGAGAAGAGCAAGCATCTTCAGATAAAGATGAAGAGTAA | 759 | 0.3926 | MMSQLIDPCQSLSKFARFLWRQIQNFHFPFLLKPPKHSNSKVINSSFTLSIHLSLCLCKRLKMAGASSKSNPPRTRKRVEVETNSLKRAKDGSAFTRCEECKKDVPVVLIDMHNCSLDSKIKMNLEALVVEKVEEAKKPAVRKKVVSLEQKSKKSSKKEKKVKDPNMPKRPPTAFFLFMDDFRKLYKEANPDSKSVAVVAKEGGEKWKSMTEEEKKSYMDRVVELKAEYEKAMEKFNAENGEEQASSDKDEE* | 253 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Eupl11g01707 | 252 | Gene3D | High mobility group box domain | 163 | 240 | IPR036910 | - | |
| Eupl11g01707 | 252 | PANTHER | HIGH MOBILITY GROUP B PROTEIN 12-RELATED | 74 | 250 | - | - | |
| Eupl11g01707 | 252 | CDD | HMG-box_AtHMGB1-like | 169 | 229 | - | - | |
| Eupl11g01707 | 252 | Pfam | HMG (high mobility group) box | 168 | 237 | IPR009071 | - | |
| Eupl11g01707 | 252 | MobiDBLite | consensus disorder prediction | 141 | 170 | - | - | |
| Eupl11g01707 | 252 | SUPERFAMILY | HMG-box | 159 | 242 | IPR036910 | - | |
| Eupl11g01707 | 252 | Coils | Coil | 208 | 246 | - | - | |
| Eupl11g01707 | 252 | ProSiteProfiles | HMG boxes A and B DNA-binding domains profile. | 168 | 237 | IPR009071 | - | |
| Eupl11g01707 | 252 | MobiDBLite | consensus disorder prediction | 141 | 167 | - | - | |
| Eupl11g01707 | 252 | SMART | hmgende2 | 167 | 238 | IPR009071 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Eupl11g01707 | Eupl-Chr11 | 35354064 | 35356027 | Dispersed/Wgd |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TR | HMG | Eupl11g01707 | HMG_box | 8.6e-19 | CL0114 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Eupl11g01707 | K25507 | - | msin:131236809 | 267.314 |