Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl11g01615 ATGGCGGAACCATCAATTGCCGTCTCCGATGCCTCCGCGCCTCTGCTCCGTCCGAGGCAGGGCAACAATACAGACTCGAACGCCCGGACCAATACGGTCGCGCTCCTCCTGGGCCGTGCGACGGGCCGGCGCGGGCCGTCCATGCTGGTGCGCGAGACGGCGGCGATGCAGCTCGAGGAGCGACGTGCCGATTGGGGTTACTCGAAGCCAGTCGTCGCCCTCGATATCGTGTGGAACCTCGCGTTCACTGTCGTCTCTGTTGTGATGCTCGCTTCCACCTTCAGGGAGCGGCCTAACACTCCTATTAGGATTTGGATCTGCGGGTACGCGCTGCAGTGCGTGCTTCATGTGATTTTGGTCTGGTTGGAGTATCGTCGGAGGACTACGCGAAGGATTCAAACTCTCGATGAAGGAATTAGGGCATCGGATTCGGATGTGAATGATAGTGAAGATGAGAGTGGGGATGCGGGGGGCTATCGGATTGGGAATCGGTCGAGAGTGCTCCACGACTGTACTGGCTGGCCTGTAGTATTTCTGGCATTCGATGTGTTTTTTGCCATCTTTTGTGTTGCTTTGGCTTGTGTGATTGGGGTCGCTCTCTGCTGCTGCTTGCCTTGCATTATTGCCATTCTTTATGCTGTGGCGGGCCAGGAAGGTGCAACAGAATCAGATCTCAGCATCCTTCCAAAATACAGATACCAAATGTATGGCAATGAAAAGTCTAGTGTAGGAACAGGATTAATGGTTCCCATAGCAGTGAGCAGTGGAGACTTGGCAGATGAACGAGTTCTTCTACCCGAGGATGCGGAATGCTGTATCTGCCTCACCTCATACGAGGATGGAGCAGAGCTCCATGCCCTTCCTTGCAGCCATCATTTCCACACCACATGCATTGTGAAATGGCTTAAGATTAACGCATCTTGCCCCCTCTGTAAGTACAATATCCTCAAGGGAAACAATGAACAGTTCAATCCTAATGTATCCTCACTAGCTGCCATTGCATTGTTTGCCATAATGTTTCGAAGGATGATAATTAAAGTAACTAGGTTTTACTGCATACATAAACTAATGGAGAGAGATATTGACTGTCTTAGCCACAAATCTTATAGTGGGTGTATATGTGCTTGTTGGTTGGTTTGTTCCTGTATGTGCATGAGAGAGAGGAAGCAAGTTTCTATCCAGTGGAGAAATGGGTTTCGAAGTTCCTCGAGAAATGGAAATTCCAAGGAAACGCCAGCTTATCCAGTAAACTTTGCGATGAAGATCCAGAAAATTTTTCGGAAACAGCACAACATGAAAATAGCAACGAATTTGGGTGACTAA 1323 0.4951 MAEPSIAVSDASAPLLRPRQGNNTDSNARTNTVALLLGRATGRRGPSMLVRETAAMQLEERRADWGYSKPVVALDIVWNLAFTVVSVVMLASTFRERPNTPIRIWICGYALQCVLHVILVWLEYRRRTTRRIQTLDEGIRASDSDVNDSEDESGDAGGYRIGNRSRVLHDCTGWPVVFLAFDVFFAIFCVALACVIGVALCCCLPCIIAILYAVAGQEGATESDLSILPKYRYQMYGNEKSSVGTGLMVPIAVSSGDLADERVLLPEDAECCICLTSYEDGAELHALPCSHHFHTTCIVKWLKINASCPLCKYNILKGNNEQFNPNVSSLAAIALFAIMFRRMIIKVTRFYCIHKLMERDIDCLSHKSYSGCICACWLVCSCMCMRERKQVSIQWRNGFRSSSRNGNSKETPAYPVNFAMKIQKIFRKQHNMKIATNLGD* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl11g01615 440 SMART ring_2 271 311 IPR001841 -
Eupl11g01615 440 Pfam Ring finger domain 270 312 IPR001841 -
Eupl11g01615 440 ProSiteProfiles Zinc finger RING-type profile. 271 312 IPR001841 -
Eupl11g01615 440 SUPERFAMILY RING/U-box 261 318 - -
Eupl11g01615 440 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 256 321 IPR013083 -
Eupl11g01615 440 FunFam E3 ubiquitin protein ligase RIE1 251 319 - -
Eupl11g01615 440 PANTHER TARGET OF ERK KINASE MPK-1 40 318 - -
Eupl11g01615 440 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl11g01615 Eupl-Chr11 31576126 31612846 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl11g01615 1 322 C3H Transcription Factor Family AT1G68070 58.571 5.37e-138 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl11g01615 - K13148 ming:122078929 477.633