Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl11g01600 ATGGAAGAAGAAACAACACAAAACTCAGGGAAGAGGCTAAAATGCGCCGGGGCGGAAGAAGATCAGAGCGAGCTTCCTCTCAAGCCAGGGATCTTTTTCTACCCGATAACACCTTCGGCCTTCGTCGTATCGGACGCTATGGATCCGGATTTTCCCATCATTTACGTCAACACCGTCTTCGAAATCTTCACCGGATACAGAGCAGACGAAGTTCTGGGCAGAAACTGTCGGTTCTTACAGTATAGAGATCCACGTGCACAACGGCGACATCCATTAGTGGATCCTGTAGTTGTTTTAGAGATCCGAAGATGTCTTGAGGAAGGGGTGGAATTCCAAGGTGAGCTGCTCAACTTCAGGAAGGATGGTACTCCCTTGGTGAACAGGCTGCGGCTTACACCCATACATGGGGATGATGGCATTGTAACACACATCATAGGTATTCAGGTGTTCTCTGAAACAAAGATAGATCTGAACCATGTATCATATCCAGTCTTCAAACAGACTTCTCGTCAGCTATGCGATCAGTTGGGAGGAAATTCTCCCATTAGTCAACAAGCTCCAAACAGCCAACAGCAAGATGTATGTGGAATTCTTCTGCTTTCTGATGAAGTCTTAGCCCATAACATCTTATCGCGCTTGACGCCAAGGGATGTTGCATCCATTGGATCAGTCTGCAGAAGGATTCGTCAACTAACAAAGAATGAACATGTGAGGAAGATGGTCTGTCAAAACGCTTGGGGAAGAGAAGTGACAGGTACGTTGGAGTTGATGACAAAGAGATTAGGGTGGGGTCGACTAGCAAGGGAGCTGACCACGCTCGAGGCAGTTTGTTGGAAGAAGCTGACTGTTGGAGGTGCGGTTGAGCCTTCACGTTGCAATTTCAGTGCGTGTGCTGCAGGGAACCGGCTTGTTCTTTTTGGAGGGGAAGGAGTTAACATGCAACCGATGGACGACACATTCGTTCTCAATTTGGATGCAGCGAATCCAGAATGGCGTCGTGTGAGTGTAACTTCCTCCCCACCAGGGCGCTGGGGCCACACACTCTCATGCCTGAATGGGTCTTGGCTGGTAGTATTTGGGGGATGCGGGAGGCACGGGCTGCTCAATGATGTGTTTGTGTTGGACTTGGATGCCCAACAGCCAACATGGAAAGAAGTCTCAGGTGGAGCTCCCCCCCTCCCCAGATCTTGGCACAGCTCTTGTACAGTGGAAGGCTCAAAATTGGTTGTCTCAGGTGGATGCACAGATGCTGGGGTACTTCTCAGTGACACATTTCTACTTGATCTCACAACAGACAAGCCAATGTGGAGGGAGATTCCTACCTCATGGGCCCCTCCGTCTAGATTGGGACACTCTCTCTCTGTCTATGGAAGGACAAAGATTCTTATGTTCGGTGGACTTTCCAAGAGTGGGCCCCTACAATTGAGATCAGGCGAGTCTTACACGATCGATTTGGAGGATGATGAACCGCAGTGGAGGCAACTGGAGTGTAGTGTGTACGCTGGTGTGGGCAGCCAGAATGCGGTGGTTCCTCCACCCAGACTTGACCATGTTGCTGTAAGCATGCCTTGTGGAAGGATTATAATCTTCGGTGGCTCCATTGCTGGTCTGCATTCTCCTTCTCAGCTCTTCCTTCTGGATCCTTCCGAGGATAAACCCTCATGGAGGATTCTTAATGTTCCTGGGCAGCCACCCAAATTCGCTTGGGGTCATAGCACCTGTGTGGTTGGAGGGACTAGAGTCCTGGTTTTGGGTGGGCACACTGGCGAGGAGTGGATACTGAATGAACTGCACGAGCTTTGTTTGGCGAGCAGACCAGAATTGGAGCCGTGA 1833 0.5014 MEEETTQNSGKRLKCAGAEEDQSELPLKPGIFFYPITPSAFVVSDAMDPDFPIIYVNTVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVLEIRRCLEEGVEFQGELLNFRKDGTPLVNRLRLTPIHGDDGIVTHIIGIQVFSETKIDLNHVSYPVFKQTSRQLCDQLGGNSPISQQAPNSQQQDVCGILLLSDEVLAHNILSRLTPRDVASIGSVCRRIRQLTKNEHVRKMVCQNAWGREVTGTLELMTKRLGWGRLARELTTLEAVCWKKLTVGGAVEPSRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVTSSPPGRWGHTLSCLNGSWLVVFGGCGRHGLLNDVFVLDLDAQQPTWKEVSGGAPPLPRSWHSSCTVEGSKLVVSGGCTDAGVLLSDTFLLDLTTDKPMWREIPTSWAPPSRLGHSLSVYGRTKILMFGGLSKSGPLQLRSGESYTIDLEDDEPQWRQLECSVYAGVGSQNAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEDKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWILNELHELCLASRPELEP* 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl11g01600 610 Gene3D - 199 237 - -
Eupl11g01600 610 FunFam Adagio protein 1 31 159 - -
Eupl11g01600 610 Gene3D - 473 604 IPR015915 GO:0005515
Eupl11g01600 610 FunFam Putative LOV domain-containing protein 268 473 - -
Eupl11g01600 610 CDD F-box_AtADO-like 196 242 - -
Eupl11g01600 610 NCBIfam PAS domain S-box protein 47 147 IPR000014 -
Eupl11g01600 610 Pfam Kelch motif 515 562 IPR011498 GO:0005515
Eupl11g01600 610 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 22 604 - -
Eupl11g01600 610 Pfam Galactose oxidase, central domain 291 341 - -
Eupl11g01600 610 SUPERFAMILY F-box domain 188 249 IPR036047 GO:0005515
Eupl11g01600 610 MobiDBLite consensus disorder prediction 1 21 - -
Eupl11g01600 610 ProSiteProfiles PAS repeat profile. 46 84 IPR000014 -
Eupl11g01600 610 Gene3D PAS domain 36 159 - -
Eupl11g01600 610 FunFam Putative LOV domain-containing protein 474 606 - -
Eupl11g01600 610 Pfam Galactose oxidase, central domain 405 456 - -
Eupl11g01600 610 Pfam Galactose oxidase, central domain 356 402 - -
Eupl11g01600 610 Pfam F-box domain 198 234 IPR001810 GO:0005515
Eupl11g01600 610 Gene3D - 270 472 IPR015915 GO:0005515
Eupl11g01600 610 SUPERFAMILY PYP-like sensor domain (PAS domain) 47 148 IPR035965 -
Eupl11g01600 610 CDD PAS 48 147 IPR000014 -
Eupl11g01600 610 SUPERFAMILY Galactose oxidase, central domain 277 595 IPR011043 -
Eupl11g01600 610 Pfam PAS domain 41 148 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl11g01600 Eupl-Chr11 30615992 30619933 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl11g01600 40 149 AGC Kinase Gene Family AT5G58140 45.455 1.20e-21 97.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl11g01600 K12116 - mnt:21388994 1097.8