Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl11g01578 ATGTTAATGGCGACCAGAGCTTTCATAGCTTCTTCAACCGCCTCTTTAAATCACTTCCGTCCTCTAACGCGCGCTTCTTCCTCCAATGCCTCTTATCCTGGGCGACTGGTGCCACACCCACCCGACCTGATCGGGTGGGTCAGGAGGGAAGGGGGTTTCGTTCACCAGGGGTTGAAGATAGCAGATGAGGACTCCTATGGGCTCGGTTTGGTAGCTTCTGAAGAGATATCCAAAGGGTCGGACCTCATTGCCCTTCCGAGTCATCTCCCGCTTCGCTTTCAGTCTCTTGATTCGGAGGACGGAGATGGTCTTGATTCTGTTTTAATCCAACTGGCTCGTCAAGTTCCTGAGGAACTGTGGGCTATGAGACTGGGTTTGAAGCTTCTCCAAGAAAGAGCTATGGTTGGTTCCTTCTGGTGGCCATACATCAGCAATCTACCTGAAACTTACAGCGTACCCATTTTCTTTCCTGGGGAGGACATAAAGAATCTGCAGTATGCTCCTCTTCTTCATCAGGTCAATAAAAGATGTCGGTTTCTTCTGGATTTTGACAAAGAAATAAAACATGTACTTGCGAATGTGGGACTAGATGATCATCCTTTTGGGGACCAAGATGTAGATGCATCCTCCCTTGGTTGGGCCATGTCGGCTGTCTCTTCTCGGGCCTTCCGTTTGCATGGCGAAAGGCTCCTAGATGGGACTGATGCCTATGTCCCTATGATGCTTCCTCTCATTGATATGTGCAACCACAGTTTCCATCCAAATGCTCAAATAGTTCAGGAGCAAGATACAAGGGACCCAAACATGTTAGTGAAGGTCATAGCAGAAAAACAGATCAAACAAGACGATGCGGTAGTGCTTAACTATGGTTGTTTGAGCAATGATTTTTTCCTTCTAGATTATGGATTCGTAATCCCTTCAAACCCCTATGACTGCATTGAGCTCAAGTATGATGGAGATCTTCTTGATGCCGCGAGCATGGCTGCCGGCATTCCGCCCCCCAACTTCTCTTCACCTGCCCCATGGCAGCAGCAGATTCTATCACAACTAAGTTTACAAGGAGAAGCTTCGCTTCTCAAGGTAAGCTTAGGAGGTCCTGAATTGGTAGAGGGTCGTTTGTTGGCTGCCTTAAGAGTACTTCTTGCAAGTGACGTTGAAACAGTACAGAAACATGATTTGAGTACTCTCAAGTCGCTATCTGCCAATGCACCTCTGGGGGTGTCGAATGAAGTCGCCACTCTGCGCACTCTTATCGCTTTGTGTGTGATTGTGCTGGGGCACTTCCCGACCAAAATAATGGAGGACGAAGCACTGTTGAAAGCAGGTGCTACTGGCTCGACAGAGTTGGCCGTCCAATTTAGGATCCAAAAGAAATCCCTGATCATAGATGTCATGAAAGATCTCACACGGAGAGTGAAGATACTGCTGTCAAAGGAAAAGGCCACATCCCAAGCTTAA 1458 0.4781 MLMATRAFIASSTASLNHFRPLTRASSSNASYPGRLVPHPPDLIGWVRREGGFVHQGLKIADEDSYGLGLVASEEISKGSDLIALPSHLPLRFQSLDSEDGDGLDSVLIQLARQVPEELWAMRLGLKLLQERAMVGSFWWPYISNLPETYSVPIFFPGEDIKNLQYAPLLHQVNKRCRFLLDFDKEIKHVLANVGLDDHPFGDQDVDASSLGWAMSAVSSRAFRLHGERLLDGTDAYVPMMLPLIDMCNHSFHPNAQIVQEQDTRDPNMLVKVIAEKQIKQDDAVVLNYGCLSNDFFLLDYGFVIPSNPYDCIELKYDGDLLDAASMAAGIPPPNFSSPAPWQQQILSQLSLQGEASLLKVSLGGPELVEGRLLAALRVLLASDVETVQKHDLSTLKSLSANAPLGVSNEVATLRTLIALCVIVLGHFPTKIMEDEALLKAGATGSTELAVQFRIQKKSLIIDVMKDLTRRVKILLSKEKATSQA* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl11g01578 485 Pfam SET domain 67 290 IPR001214 GO:0005515
Eupl11g01578 485 Pfam Rubisco LSMT substrate-binding 338 459 IPR015353 -
Eupl11g01578 485 ProSiteProfiles SET domain profile. 56 290 IPR001214 GO:0005515
Eupl11g01578 485 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 300 480 IPR036464 -
Eupl11g01578 485 FunFam Histone-lysine N-methyltransferase setd3 5 303 - -
Eupl11g01578 485 FunFam SET domain containing protein 326 479 - -
Eupl11g01578 485 SUPERFAMILY SET domain 38 308 IPR046341 -
Eupl11g01578 485 Gene3D - 331 480 IPR036464 -
Eupl11g01578 485 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 42 447 - -
Eupl11g01578 485 CDD SET_LSMT 57 304 - -
Eupl11g01578 485 Gene3D set domain protein methyltransferase, domain 1 12 303 - -
Eupl11g01578 485 SMART set_7 56 296 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl11g01578 Eupl-Chr11 28297121 28315028 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Eupl11g01578 SET 5.6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl11g01578 - - nnu:104607250 750.74