Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl11g01564 ATGGATGATGTGAAGGACAAAGTCAAGGGTTTCATGAAGAAGGTGAACATTCCGTTCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCCTCTTCCTCTTCCTCCTCCTTCTTCTCTTCTTCTTCTTCCCGTAAATTCAAGGGCCAGGGGAGAGTATTGGGCTCCTCTTCCTCCGGAACCACTAATCCAATTCCCTCCCGTCCATCCCAAAACCACGAATCGAAACAAAACCCGTCTTCTGTCGCACCGTCGATCCCAAGACCCAAATCATCACCATCCAATTCCGACCAACGACCGACGAACGGCTTGGATCCCTCGAACAATCCAAATTCCCATCACAAACCGTCCGACGGGTTTGATCCGTTTGACTCACTCATCACTTCCGGAAAACGCTCCCACACTGGTCATTCCGTTAATGTTTTCGAGTGTCCAGTTTGCGGACAATCGTATCGCTCCGAAGAGGAGGTTTCCGAACACATCGAGAGCTGTGTCCGTAACTCAGCTGAGAATGCTGAGACTACAACAACAGAATTGCCCGATAACAGGCCCGATGCAGATTCGCAAAATGAAATGGCAGTTCGTGTTGCCGCTTATGTTTCTGGAGGGCCGTCGGAAGGGTCAATTGAGGTTGTTCTGAAGCTATTGAGGAATATTGTTAAAGAACCAGACAATGCCAAGTTCCGAAGAATTCGAATAAGCAATCCAAAGATAAGAGAGGCTGTTGGTGCGGTGGCGGGAGGTGTTGAATTACTGGAGTGTCTTGGGTTTAGACTCCAAGAGGAAGGCGGAGAGATGTGGGCGGTGATGGAAGTTCCTCTGGAGGAACAGATATTTTTAATCAAAGAAGCAATACTAGTATTGGAGCCACGGAAAGTAGAAGATTTGCCTTCCACAGCTGCAAATGGAGCAGATAGTTCAATGGAGTCAAAGAAGATCAACAGACGGGATATTCCAATGGAGCCAAAGAAGATCGACAGACAGGTTCGGGTCTTCTTTTCTGTTTCTGAAAGTATAGCAGCGAAAATTGACCTGCCAAGTTCTTTCTATAACCTATCAATGGAAGAACTGAAAAGAGAATCTGATCTGAGGAAGAAAAAGATTGCAGAGTCCCAGCTTCTCATTCCCAAGTCATATAAAGAAAGACAAACAAAGGCTGCAAAGAAGAGGTACAAAAACACTGTTATTCGGATCCAGTTTCCTGATGAGGTAGTGCTCCAAGGTGTCTTTTTACCATGGGAGCCAACCACTGCACTCTATGAGTTTGTGAGCTCATCATTGAAAGAACCTGGTTTGGAATTTGAGCTATGGCATCCGGCATTGGTCAAGCGGCAGGTGATCCCACGGTTTGCAGGAGCAAGAGAGAGAACAACAACATTAGAGGAAGAGGACTTGGTCCCGACAGCTCTTATCAAGTTCAAACCCAGAGAGACAGATTCGGTCGTTTTCACTGGGCTTTCCAATGAACTTCTTGAAATTAGCGAACCACTTACAACGAAAACAACAGTTGCTCCAGCATAA 1515 0.466 MDDVKDKVKGFMKKVNIPFSSSSSSSSSSSSSSSSFFSSSSSRKFKGQGRVLGSSSSGTTNPIPSRPSQNHESKQNPSSVAPSIPRPKSSPSNSDQRPTNGLDPSNNPNSHHKPSDGFDPFDSLITSGKRSHTGHSVNVFECPVCGQSYRSEEEVSEHIESCVRNSAENAETTTTELPDNRPDADSQNEMAVRVAAYVSGGPSEGSIEVVLKLLRNIVKEPDNAKFRRIRISNPKIREAVGAVAGGVELLECLGFRLQEEGGEMWAVMEVPLEEQIFLIKEAILVLEPRKVEDLPSTAANGADSSMESKKINRRDIPMEPKKIDRQVRVFFSVSESIAAKIDLPSSFYNLSMEELKRESDLRKKKIAESQLLIPKSYKERQTKAAKKRYKNTVIRIQFPDEVVLQGVFLPWEPTTALYEFVSSSLKEPGLEFELWHPALVKRQVIPRFAGARERTTTLEEEDLVPTALIKFKPRETDSVVFTGLSNELLEISEPLTTKTTVAPA* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl11g01564 504 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 2 1 498 - -
Eupl11g01564 504 Pfam PUB domain 205 270 IPR018997 -
Eupl11g01564 504 MobiDBLite consensus disorder prediction 16 113 - -
Eupl11g01564 504 SUPERFAMILY Ubiquitin-like 363 471 IPR029071 -
Eupl11g01564 504 ProSiteProfiles Zinc finger C2H2 type domain profile. 140 170 IPR013087 -
Eupl11g01564 504 CDD PUB 203 284 - -
Eupl11g01564 504 SMART PGNneu 205 272 - -
Eupl11g01564 504 MobiDBLite consensus disorder prediction 165 181 - -
Eupl11g01564 504 Gene3D - 381 474 - -
Eupl11g01564 504 SUPERFAMILY PUG domain-like 204 274 IPR036339 -
Eupl11g01564 504 FunFam UBX domain-containing protein 6 381 472 - -
Eupl11g01564 504 Gene3D - 202 286 - -
Eupl11g01564 504 MobiDBLite consensus disorder prediction 165 185 - -
Eupl11g01564 504 MobiDBLite consensus disorder prediction 1 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl11g01564 Eupl-Chr11 27342407 27367893 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl11g01564 1 419 C2H2 Transcription Factor Family AT2G01650 52.693 1.25e-137 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Eupl11g01564 PUB 3e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl11g01564 K14011 - nnu:104607377 613.224