Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl11g01556 ATGGGAAGGCAACCTTGTTGTGACAAAGTAGGGTTGAAGAAGGGGCCATGGACAGCTGAAGAAGATAAAAAGCTCATCAACTTCATCCTCACTAATGGCCAATGCTGCTGGAGAGCTGTTCCTAAACTTGCAGGATTGTTAAGGTGTGGGAAGAGTTGTAGGCTTAGATGGACAAACTATCTAAGGCCTGATTTGAAGAGGGGCTTGTTATCAGAATCTGAAGAGCAGATGGTTATTGAGCTCCATTCTCGTCTTGGCAATAGATGGTCTAAGATTGCTGCTCATCTCCCTGGTAGGACTGATAATGAGATCAAGAACCATTGGAACACCCACATCAAGAAAAAACTAAAGAAGATGGGAATTGATCCTCTCACTCACCAACCAATCTTGTCTTCTACAACTGATGAACAGCAACAACAACAATCTTCTACTACAGCTGCTACCATTTCTGAAGCAGACAAAAACAAGGGAAATGAGGCTTCTTTAGAGTCATGTATCACTGAGACAAAAGAAGAGAAGAACATTACAAGCCCATTTCATTCTATAGAAAACAGTGATGGTTTTTGCACTGATGAGGTCCCTTTGATTCAACCACATGAGATACTTGTCCCTTCTTCATCAACTTCTTCATCTTCATCTTCTTCTGATTCATCTGGGATGCCTCAAGACTTCCAGTTCTCAAGCTTTGGCTGGCCTGAATACAACACCACATGTTTCTGGGATGATTTCAATTGTTGGGATTTAATTTATGATGCTGATGATGATGAAAGAAAACTAGCCGTTGATCCTCCTCTCACTCAGTACCAAAGAATGGTTTATGATCAAGAATCTTGGCAATTTTGA 843 0.4116 MGRQPCCDKVGLKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSESEEQMVIELHSRLGNRWSKIAAHLPGRTDNEIKNHWNTHIKKKLKKMGIDPLTHQPILSSTTDEQQQQQSSTTAATISEADKNKGNEASLESCITETKEEKNITSPFHSIENSDGFCTDEVPLIQPHEILVPSSSTSSSSSSSDSSGMPQDFQFSSFGWPEYNTTCFWDDFNCWDLIYDADDDERKLAVDPPLTQYQRMVYDQESWQF* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl11g01556 280 SMART sant 13 63 IPR001005 -
Eupl11g01556 280 SMART sant 66 114 IPR001005 -
Eupl11g01556 280 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 212 - -
Eupl11g01556 280 CDD SANT 16 61 IPR001005 -
Eupl11g01556 280 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Eupl11g01556 280 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Eupl11g01556 280 FunFam MYB transcription factor 68 129 - -
Eupl11g01556 280 MobiDBLite consensus disorder prediction 125 161 - -
Eupl11g01556 280 Gene3D - 11 67 - -
Eupl11g01556 280 MobiDBLite consensus disorder prediction 126 161 - -
Eupl11g01556 280 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Eupl11g01556 280 CDD SANT 71 112 IPR001005 -
Eupl11g01556 280 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Eupl11g01556 280 Gene3D - 70 157 - -
Eupl11g01556 280 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Eupl11g01556 280 FunFam MYB transcription factor 11 67 - -
Eupl11g01556 280 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Eupl11g01556 280 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl11g01556 Eupl-Chr11 26932394 26934066 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl11g01556 1 220 MYB Transcription Factor Family AT5G16600 65.179 3.33e-97 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Eupl11g01556 Myb_DNA-binding 7.5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl11g01556 K09422 - ming:122082547 418.313