Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl11g01503 ATGAAGATTCAAAACCATTACCGACGGTCACTGACCGTCACTAAAGATGGCATATACCGGAGTAGAGATGCAACAATTCAAAATTTCATTTTCCCGGCAAATCTCAAACTAATTGAAGACAAATTCACCCTTCACAGCAATGGATCTGAAGATGGAGAATATCCTAATCGAGGGATGGGATCTGTTGTTGCTACGGTCAGCGGCTACCACGGTTCAGAGCGGTTTAAGCTCATTAAGCTTATCACCCAAACAGGTGCTAACTATGTAGGCGCAATGACGAAATCAATGAGCCATTTGGTATGTTGGCGATTCGAAAGAAGGAAATATAATCTGGCTAAGAAATTTGGTACAATTATAGTTAGCCATCGTTGGTTCGAGGATTGCACCAAGGAAGGGAAACATCTACCGGAGCGTCCCTATATCATGCAGAGGTACCAATTATTTGTTAATATAATAGAAGCAAAGGAATCCGAATCAGAGGAAACAGAAGAAATATCAAAGGAAGAGGAGATAGGAATAAAGTTGTTCAAAGGTGAAACATTTAATATTTTGTCATCATCCGAAGCTGGCATACCTCGTCAAGACTACGAGAACAGGTTGTTTCTGAATCGCCGAGGTCAAAATCCGACGAATGTCTACAATGCTGTTGGAAGCACGACTTCAGCAGAACCTACTTGCAAGGGCCGATGGCTTGTGAAAAAGAATGCGTACAGAGACATCTTGGAATCTGTTGTATTGGATTGTGAGCAAGAATGTTCTGCAACGGAAATCTGTAACCAACTTCAAAACATCACTGCTGCATCTAATGATCCAAATTATTTGAGAAATGAGAATGCATTAACACGCCGAGGAACAACATTGGAGTATGGGTTCTGTAATGGAGAAAATAGGAATGGAGAGCTGGAAGAAGTTGCAGATATCAGAGAGTTGAATGATAAGCCTGTTTCAAAGGATTCAAATATATTGAGTGAGGATCTGCTGCCTATCCATGAGAGGACTTCACAAAGTGGGTTTTCTGATTTTGAGGAGAATATGGATGGAGCTTTGAAAGATGTTGGTGAGTTCAGAGAAATAAACAGATTGCCAACTTCACCGAAATTATCGTGTGTTATATGTTGGACAGATTATAGCTTAACGAGGGGGGTATTACCATGTGGACATCGGTTCTGTTATTCCTGCATCCAAGGCTGGGCCGATCGTATGGCTTCAAGAAGAAAGGTTTCAACGTGCCCTTTGTGCAAGGCTAGTTTCTTGAGCATCACAAAGGTGGAAGGTGCTGCCTCTTCTGATCAGAAAATATATTCACAGACTATTCCATATGCCTCATCAGCAACAGATATTTTCATGCTTCCTGATCAAGAAATTTCCAGTTTTGGAGTCCAGCATCGGTTTGTTGCAAATGTCGCTTTCGGGAACCTGAGGATCTTCTTATTAGCTGTCATCTCTGTCGGAGTCAAGCAGTCCATTCCTACTGCCTGGACCCACCTTTGTTTCCATGGACTTTACTTGGGCTATCTATGGAATTACCATGGGTGGAGTGGAAAGCTGCCATTTGCTGCGTGCATTGGAATGGCGAAAGGAAGAAAACATAAAAATCAGCTTTTTCTTGACCTCCTCTCCAAGTTTGGTGATCGATCATTCTCCATGGTACTAGAGAACCTGGGCATAGCAGACATGTGGCATGTCCAGATCCAAGTAGAGCTGCAACTCGGGCGATTTGAGTCAGGTTTAAGTTCTCTACCTGTTACGCAAGGGAGTGCCTCCAAGAAGAGGAGCACGGTGGTGGTTGCCGGCCAGCAACCGATTGGAGGAGAGGGTGCAGCACTTTGCACCCCGGTTGAGGAGAAGGGAGACAATCGGGTTGAAGGCCGGTCTCTTGTGAAGGGAAGAGGAGTTGGGCATGTGGACAACCGTTTAGAGGAGTGCAGCAAGGCTGCACGGTGGAGATAG 1950 0.4415 MKIQNHYRRSLTVTKDGIYRSRDATIQNFIFPANLKLIEDKFTLHSNGSEDGEYPNRGMGSVVATVSGYHGSERFKLIKLITQTGANYVGAMTKSMSHLVCWRFERRKYNLAKKFGTIIVSHRWFEDCTKEGKHLPERPYIMQRYQLFVNIIEAKESESEETEEISKEEEIGIKLFKGETFNILSSSEAGIPRQDYENRLFLNRRGQNPTNVYNAVGSTTSAEPTCKGRWLVKKNAYRDILESVVLDCEQECSATEICNQLQNITAASNDPNYLRNENALTRRGTTLEYGFCNGENRNGELEEVADIRELNDKPVSKDSNILSEDLLPIHERTSQSGFSDFEENMDGALKDVGEFREINRLPTSPKLSCVICWTDYSLTRGVLPCGHRFCYSCIQGWADRMASRRKVSTCPLCKASFLSITKVEGAASSDQKIYSQTIPYASSATDIFMLPDQEISSFGVQHRFVANVAFGNLRIFLLAVISVGVKQSIPTAWTHLCFHGLYLGYLWNYHGWSGKLPFAACIGMAKGRKHKNQLFLDLLSKFGDRSFSMVLENLGIADMWHVQIQVELQLGRFESGLSSLPVTQGSASKKRSTVVVAGQQPIGGEGAALCTPVEEKGDNRVEGRSLVKGRGVGHVDNRLEECSKAARWR* 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl11g01503 649 SUPERFAMILY BRCT domain 56 142 IPR036420 -
Eupl11g01503 649 SUPERFAMILY RING/U-box 361 421 - -
Eupl11g01503 649 ProSiteProfiles BRCT domain profile. 73 142 IPR001357 -
Eupl11g01503 649 SMART BRCT_7 57 132 IPR001357 -
Eupl11g01503 649 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 365 433 IPR013083 -
Eupl11g01503 649 ProSiteProfiles Zinc finger RING-type profile. 369 414 IPR001841 -
Eupl11g01503 649 PANTHER F5A8.9 PROTEIN 200 461 - -
Eupl11g01503 649 ProSitePatterns Zinc finger RING-type signature. 385 394 IPR017907 -
Eupl11g01503 649 SMART ring_2 369 413 IPR001841 -
Eupl11g01503 649 Pfam Ring finger domain 368 414 IPR001841 -
Eupl11g01503 649 Pfam twin BRCT domain 62 124 IPR001357 -
Eupl11g01503 649 Gene3D BRCT domain 56 142 IPR036420 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl11g01503 Eupl-Chr11 24668257 24702894 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl11g01503 96 160 Core DNA Replication Machinery Family AT4G02110 45.455 3.65e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl11g01503 - - vri:117929805 382.104