Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl11g01427 ATGGGTGGAAAGAAAGAAGATCGAGGAGAGTGTTCTCAGAGAATTCACAACATTCAAGGCTACCAAGAACAAGTACTAGTTCTCCAACAGCAACAAGAACAACAGAAGCAGCATCAACAGCTTCAGCAACAACAATACAGTGATGGTTATGGAGATGGTGGAGGATTGAGAGGAGGACTACTCTTCCCTGAAGTCTCTCCGATCCTACCATGGTCTCTTTCAGTTCCACCGGTTCACACCTTCAATCCGGTTCAGTTCTCAACAGACCCAGTTCGAGATCACAACCCGTTTCTTCTTCCTCCTCCTCCTCCAGCATATGGGAGTTTATTCAACCGAAGAGCTTCCTCTCTACAGTTTGCTTATGAAGGTCCATCATCAGATCATCTCCGAATCATACCAGATCCATTTGGACCGGCGATTCAACACGGTTCCTCTCCTTTTGGGCTTCAAGCCGAGTTGGGTAAAGTGACTGCTCAAGAGATCATGGACGCCAAAGCTCTTGCGGCCTCTAAGAGCCATAGCGAGGCTGAGAGGAGACGGAGAGAAAGAATCAACACCCATCTTGCTAAATTACGCAGCTTGCTACCTAGCACCACCAAAACGGACAAAGCTTCACTATTGGCAGAAGTTATCCAACATGTGAAAGAGCTTAAAGGCCAGACTTCCCAGATTGCCGAGTCGAGTCCAGTCCCGACCGAGATCGATGAACTCACAGTTGATGCATCCGAGGACGACGGGAAGTTCGTAATTAAAGCTTCTTTATGCTGTGAAGACAGGTCTGATCTCTTGCCTGATCTCATAAGAACCTTGAAAGCTCTCCGATTACGAACCCTGAAAGCCGAGATTACAACATTAGGAGGGCGCGTAAAAAACGTCTTGTTCATCACTGGAGAAGAAGAATCAAAGAGTAGTGATGACCAACAACAACAATACTCAATTAGTTCAATTCAAGAAGCATTGAAAGCAGTGATGGAGAGAACAGGTGGTGATGAGTCTTCTTCAGGGAGTATAAAGAGACAAAGAACCAATATGAACATGCTTGGACACAGGTCTCTTTAA 1059 0.4589 MGGKKEDRGECSQRIHNIQGYQEQVLVLQQQQEQQKQHQQLQQQQYSDGYGDGGGLRGGLLFPEVSPILPWSLSVPPVHTFNPVQFSTDPVRDHNPFLLPPPPPAYGSLFNRRASSLQFAYEGPSSDHLRIIPDPFGPAIQHGSSPFGLQAELGKVTAQEIMDAKALAASKSHSEAERRRRERINTHLAKLRSLLPSTTKTDKASLLAEVIQHVKELKGQTSQIAESSPVPTEIDELTVDASEDDGKFVIKASLCCEDRSDLLPDLIRTLKALRLRTLKAEITTLGGRVKNVLFITGEEESKSSDDQQQQYSISSIQEALKAVMERTGGDESSSGSIKRQRTNMNMLGHRSL* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl11g01427 352 Pfam Helix-loop-helix DNA-binding domain 171 217 IPR011598 GO:0046983
Eupl11g01427 352 CDD bHLH_AtAIG1_like 163 241 - -
Eupl11g01427 352 PANTHER TRANSCRIPTION FACTOR BHLH30 30 343 IPR045847 GO:0003700|GO:0006355
Eupl11g01427 352 Gene3D - 162 228 IPR036638 GO:0046983
Eupl11g01427 352 SMART finulus 174 223 IPR011598 GO:0046983
Eupl11g01427 352 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 168 217 IPR011598 GO:0046983
Eupl11g01427 352 MobiDBLite consensus disorder prediction 329 352 - -
Eupl11g01427 352 MobiDBLite consensus disorder prediction 323 352 - -
Eupl11g01427 352 FunFam transcription factor bHLH30 163 226 - -
Eupl11g01427 352 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 172 225 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl11g01427 Eupl-Chr11 22387986 22390467 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl11g01427 10 341 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 56.125 4.47e-103 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Eupl11g01427 HLH 1.5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl11g01427 - - vvi:100250878 463.381