Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl11g01425 ATGCTTCGAAGGAAAACGATGAGTTGGAGCAGAGTCGCTAAATCTGCGCAGGTTGTGGCAGCCCATGGCTTGCTCTTTTCTTTTACGCTTTTGCTCGTACTCAAGCTCGATCATGTCGTCCGTTACTCATGGTGGACGATTTTTTCCCCCCTCTGGCTATTTCATGTAGTTGTTGCACGAGGCAGATTCTCTTTACCGGCTCCATCAATACCACATGATCGCCATTGGGCACCTTGTCATGCGATTGTCGCGACACCATTGCTTGTTGCATTTGAACTACTCCTTTGTGTATATCTCGAGAGCATCTATGCTCGGGGCTTTGCAGCTGTAAGCTTGAAGATTGTCTTTCTTCCCTTGTTGGCATTTGAAATAATTATTTTGATTGACAATTTCAGGATGTGTAGGGCCCTAATGCCGGGAGATGAAGAAAGCATGAATGATGAAGCAATATGGCAGTCCCTTCCTCACTTTTGGGTTGCAATCTCCATGGTTTTCTTCGTTGCTGCAACGACATTCACTCTTCTAAAGATATGCGGTGATATAGATTCCCTAAGCTGGTGGGATTTATTTATAAATTTTGGCATCTCAGAATGCTTTGCCTTTCTTGTTTGCACAAAGTGGTCTAATCCGGTAATTCATAGACATTCTCGCAGTCGAGAAGCCAGTTCATCCTCCACGGCTATTAGATATCTTGATTGGAACAGTAGTTTAGTCGTTTCGTCAGAGGAGGATCAGTACCAGGACAGAATGTGCAGCCTGCAGGACATTGGTGGCCATATTATGAAAATTCCACTGATCAGTTTTCAAATCATGCTTTGTATGCGTTTAGAGGGAACGCCACCTGATGCTAGACATATTCCATTTCCAGTTCTTTTCTCTCCACTTTTTCTCCTGCAAGGTGTTGGAGTCTTGTTTACTATTTGGAGACTGGTGGAGAAGATTGTTCTTTTACTACGTAGTGTAGCTGGTACAGGAAGGTATTTTGCAATCTCTTCAAGAGCTCATGACTGCTTTGCGTTCTTGCATCATGGTTCAAGGCTGCTGGGATGGTGGTCAATTGATGAAGGAAGTCGAGAGGAACAGGCTCGACTTTACCACTGTGGGGCTTCTGGGTATAACACTTTTTGTGGCTATCCACCTGAGATTGTGAAGAAAATGCCTAAAAAGGATCTCGCCGAGGAGGTTTGGAGACTCCAAGCAGCTCTTGGTGAGCAAGCAGAAATCACAAAATATAGCCAGCAGGAGTACGAAAGACTTCAAAATGAAAAGGTCTTGTGTAGGATATGTTTTCAGGGGGAGATAAGCATAGTCCTGCTGCCATGCAGGCATCGCATCCTTTGCAGCACCTGCTCTGAGAAGTGTAAGAAATGCCCCATCTGCCGAGTCTCTGTTGAGGAGCGGTTGCCTGTATATGATGTATAG 1422 0.4487 MLRRKTMSWSRVAKSAQVVAAHGLLFSFTLLLVLKLDHVVRYSWWTIFSPLWLFHVVVARGRFSLPAPSIPHDRHWAPCHAIVATPLLVAFELLLCVYLESIYARGFAAVSLKIVFLPLLAFEIIILIDNFRMCRALMPGDEESMNDEAIWQSLPHFWVAISMVFFVAATTFTLLKICGDIDSLSWWDLFINFGISECFAFLVCTKWSNPVIHRHSRSREASSSSTAIRYLDWNSSLVVSSEEDQYQDRMCSLQDIGGHIMKIPLISFQIMLCMRLEGTPPDARHIPFPVLFSPLFLLQGVGVLFTIWRLVEKIVLLLRSVAGTGRYFAISSRAHDCFAFLHHGSRLLGWWSIDEGSREEQARLYHCGASGYNTFCGYPPEIVKKMPKKDLAEEVWRLQAALGEQAEITKYSQQEYERLQNEKVLCRICFQGEISIVLLPCRHRILCSTCSEKCKKCPICRVSVEERLPVYDV* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl11g01425 473 SMART ring_2 426 460 IPR001841 -
Eupl11g01425 473 FunFam Kinesin-like protein KIN-7D, mitochondrial 403 471 - -
Eupl11g01425 473 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 402 471 IPR013083 -
Eupl11g01425 473 SUPERFAMILY RING/U-box 417 468 - -
Eupl11g01425 473 Pfam Zinc finger, C3HC4 type (RING finger) 423 466 - -
Eupl11g01425 473 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 7 473 - -
Eupl11g01425 473 Pfam Transmembrane Fragile-X-F protein 34 298 IPR019396 -
Eupl11g01425 473 ProSiteProfiles Zinc finger RING-type profile. 426 461 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl11g01425 Eupl-Chr11 22257669 22310970 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl11g01425 7 473 C3H Transcription Factor Family AT1G73950 71.520 0.0 679
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl11g01425 - - ming:122079769 856.284