LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Eupl11g01416	ATGGATAGTAGTTGTATAGATGAGAGCAATACAAGCGATTCCAATTCCAATTCCATTTCGATTTCGATTTCACCGGTATCTGCTTCACCACCAGAGAAGTTATGCCGGGTCGGGAGCGGATCGAGTGTGGTATTAGACTTGGAAAGCGGCGTCGAAGCCGAGTCAAGAAAGCTCCCCTCATCTCAATACAAGGGAGTAGTCCCACAGCCAAATGGAAGGTGGGGTGCACAGATATATGAGAAGCACCAAAGGGTATGGTTGGGGACATTCAACGAAGAGGAGGAAGCTGCTAAAGCCTACGACGTCGCAGCCCAAAGGTTCCGCGGCCGTGATGCAGTCACCAACTTCAAGCCTCTATCGGAAACCGGCGAAGATGAAATGGAGACTTTCTTCTTGAATTCCCATTCGAAGGCTGAGATTGTCGACATGCTTCGTAAACACACTTACAATGACGAGCTTGATCAAAGTAAGCGTAATTACTGTGATCACGACAATGTCACAAGAAGGGGAGGAGCCTATATGGTTTCATCCAGGTCATCGGACCATGAACCGAAAGTCCGTGAGCTGCTGTTCGACAAGGCGGTAACACCGAGTGATGTCGGTAAATTAAACCGGCTAGTTATACCAAAACAACATGCTGAGAAGCACTTCCCTCTGCAAATTGGGAGCGGTTTGTCCAAGGGTATGTTACTGAATTTCGAAGATAACGGAGGAAAAGTATGGAGATTTAGATATTCTTATTGGAATAGTAGTCAGAGCTATGTGTTAACAAAAGGGTGGAGCAGATTCGTGAAGGAGAAGAGCTTGAAGGCAGGCGATATTGTTAGTTTTCAACGATCATCAAACGGACAAGGTCATGATAAACAGTTTTACATTGATTGGAAGCCAAGAATCGGGTCGGGTTCTATGGGGTTGCCATCGACGTCGAACCAAATTTACCCGGTTAACCCAGTTTCACCGGTTCAGGTAGTCAGGTTATTTGGGGTTAACATTTTTAAAGTACCAGTTGGCAGTAGTAGTGTTGTGGATAGTAGTAGTTGGAGTGGTAAGAGAATGAGGGATGTGGAATTATTTTCATTAGAGTGTTGTAAGAAACAACGCGTTGTAGGAGCTTTGTAG	1119	0.454	MDSSCIDESNTSDSNSNSISISISPVSASPPEKLCRVGSGSSVVLDLESGVEAESRKLPSSQYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEEEAAKAYDVAAQRFRGRDAVTNFKPLSETGEDEMETFFLNSHSKAEIVDMLRKHTYNDELDQSKRNYCDHDNVTRRGGAYMVSSRSSDHEPKVRELLFDKAVTPSDVGKLNRLVIPKQHAEKHFPLQIGSGLSKGMLLNFEDNGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKSLKAGDIVSFQRSSNGQGHDKQFYIDWKPRIGSGSMGLPSTSNQIYPVNPVSPVQVVRLFGVNIFKVPVGSSSVVDSSSWSGKRMRDVELFSLECCKKQRVVGAL*	373

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Eupl11g01416	372	ProSiteProfiles	AP2/ERF domain profile.	62	117	IPR001471	GO:0003700\|GO:0006355
	Eupl11g01416	372	ProSiteProfiles	B3 DNA-binding domain profile.	191	293	IPR003340	GO:0003677
	Eupl11g01416	372	CDD	AP2	61	116	IPR001471	GO:0003700\|GO:0006355
	Eupl11g01416	372	Pfam	AP2 domain	62	109	IPR001471	GO:0003700\|GO:0006355
	Eupl11g01416	372	SMART	rav1_2	62	123	IPR001471	GO:0003700\|GO:0006355
	Eupl11g01416	372	Gene3D	-	185	300	IPR015300	-
	Eupl11g01416	372	MobiDBLite	consensus disorder prediction	1	27	-	-
	Eupl11g01416	372	SMART	B3_2	191	298	IPR003340	GO:0003677
	Eupl11g01416	372	SUPERFAMILY	DNA-binding domain	61	117	IPR016177	GO:0003677
	Eupl11g01416	372	MobiDBLite	consensus disorder prediction	1	34	-	-
	Eupl11g01416	372	Pfam	B3 DNA binding domain	191	284	IPR003340	GO:0003677
	Eupl11g01416	372	SUPERFAMILY	DNA-binding pseudobarrel domain	189	290	IPR015300	-
	Eupl11g01416	372	CDD	B3_DNA	190	280	IPR003340	GO:0003677
	Eupl11g01416	372	FunFam	AP2 domain-containing protein RAP2.8	61	118	-	-
	Eupl11g01416	372	Gene3D	AP2/ERF domain	61	118	IPR036955	GO:0003700\|GO:0006355
	Eupl11g01416	372	PRINTS	Ethylene responsive element binding protein signature	63	74	IPR001471	GO:0003700\|GO:0006355
	Eupl11g01416	372	PRINTS	Ethylene responsive element binding protein signature	83	99	IPR001471	GO:0003700\|GO:0006355
	Eupl11g01416	372	PANTHER	B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3	57	343	IPR044800	GO:0003700

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Eupl11g01416	Eupl-Chr11	22015290	22016809	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Eupl11g01416	1	371	RAV Transcription Factor Family	AT1G13260	61.067	1.89e-143	409

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-RAV	Eupl11g01416		B3	2e-28	CL0405

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Eupl11g01416	K09287		-	nnu:104603036	526.939