Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl11g01412 ATGCACACCTCTCCCTTTACCCACTTCTCATCTAGTGAGAGCGCTTGTTTAGATGAAGAAGAAGATGAAGAATCCGTACTTCTCACTCTTCGTCCTCCTGGCCAGCACATCTCCAAAAGCCGTCTCTCCCATCGGTCCTCAGATCAAGCAGAGAATTGTCTAAACCATAGTAATGAAGAGAGTGTAACTGTTGCGCTTCATATTGGACCCCCAAGTGCAGGAGCAAGCTCAAGCAATACCACTAACAATGGTGTCGTCCCTGCTGAGGGGCAGTACTGGATTCCTTCCCCTTCTCAAATCCTCGTCGGTCCTACTCAGTTCTCTTGCACTGTGTGCAACAAGACCTTCAATCGATACAACAACATGCAGATGCATATGTGGGGGCACGGTTCGCAGTATCGAAAGGGTCCGGAGTCACTGAGGGGGACAAAACCGACATCTTCGTTATTGAGATTGCCTTGTTATTGCTGTGCTCAGGGTTGTAAGAACAACATTGAGCACCCGAGGTCGAAGCCATTAAAGGACTTCAGGACACTTCAGACACATTACAAGAGGAAGCACGGAGCGAAGCCATTTGGTTGTTGTAAATGTGGGAAGGCCTTTGCAGTGAGGGGTGACTGGCGTACCCATGAGAAGAATTGCGGAAAGCTCTGGTTTTGTATCTGTGGGTCTGATTTTAAGCACAAGAGGTCCCTTAAAGACCACGTCCGCGCATTTGGTGGTGGTCACGCGCCGCATGGTACAGAGTTATGTGAGGATGAAGAAGATGATGACAATGATGAAGAACAAGGAAATGGAGGCCATGGCTCTGTGTACTACTAA 822 0.4854 MHTSPFTHFSSSESACLDEEEDEESVLLTLRPPGQHISKSRLSHRSSDQAENCLNHSNEESVTVALHIGPPSAGASSSNTTNNGVVPAEGQYWIPSPSQILVGPTQFSCTVCNKTFNRYNNMQMHMWGHGSQYRKGPESLRGTKPTSSLLRLPCYCCAQGCKNNIEHPRSKPLKDFRTLQTHYKRKHGAKPFGCCKCGKAFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGGGHAPHGTELCEDEEDDDNDEEQGNGGHGSVYY* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl11g01412 273 ProSitePatterns Zinc finger C2H2 type domain signature. 109 129 IPR013087 -
Eupl11g01412 273 Gene3D Classic Zinc Finger 151 240 - -
Eupl11g01412 273 MobiDBLite consensus disorder prediction 250 273 - -
Eupl11g01412 273 SMART c2h2final6 155 187 IPR013087 -
Eupl11g01412 273 SMART c2h2final6 192 212 IPR013087 -
Eupl11g01412 273 SMART c2h2final6 107 129 IPR013087 -
Eupl11g01412 273 ProSiteProfiles Zinc finger C2H2 type domain profile. 107 134 IPR013087 -
Eupl11g01412 273 PANTHER ZINC FINGER PROTEIN WIP2 19 262 IPR043584 GO:0003700|GO:0010468
Eupl11g01412 273 SUPERFAMILY beta-beta-alpha zinc fingers 107 212 IPR036236 -
Eupl11g01412 273 MobiDBLite consensus disorder prediction 1 51 - -
Eupl11g01412 273 FunFam Zinc finger protein WIP2 161 243 - -
Eupl11g01412 273 Gene3D Classic Zinc Finger 106 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl11g01412 Eupl-Chr11 21961596 21962845 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl11g01412 22 246 C2H2 Transcription Factor Family AT1G13290 73.478 6.20e-122 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Eupl11g01412 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl11g01412 - - nnu:104601382 451.055