Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl11g01362 ATGAAAGTTTTCGTGAAAACTTTGAAGGGTTCTCACTTCGAGATCGAAGTGAAACCTGACGACACGGTTGCTGATGTGAAGAAAAACATAGAAACAGTTCATGGTGCTGATGTTTACCCTGCCGCACAACAAATGCTTATCCATCAGGGGAAAGTCCTTAAAGATGCCACCACACTCGATGAAAGCAAAGTTTCTGAAAATAGTTTTCTTGTCATTATGTTGACAAAGAGTAAGGGCTCATCTAGTGGACCTTCAACCACAACGGCTGTGCCCATAAGTCCGGCTCCACCCACAAGTTCAACACCACCTACTTCAATTCCGGCATTAACAACACCTCAAGCTCCTGCAGTCACCTTGGCTCCGCCACCATCTGTTCCTGAACCTGCCCCTGCTGTAGCTCCTACTGTAGTTCCTCCTGCTGCTCCTGCTTCTGTGATTAGTGCCTCCACAGAATCAGATGTCTATGGTCAAGCAGCATCAAATCTTGTTGCAGGAAATAACTTTGAGGAAACCATTCAGCAAATTCTTGATATGGGGGGAGGGAACTGGGAAAGGGATACAGTTGTCCGTGCTCTACGTGCTGCTTACAACAACCCAGAGAGAGCTGTTGAATATTTATATTCTGGTATTCCTGAACAAGCAGAAGTTCCCCCTGCGGCCCGACCTCCTACGAGTGGGCAAGCTGGAAACCCCCCTCCTGCCCAGGCTCCACAGCCGGCACAGCCAGCAGTTCCTTCCAGTGGTCCAAATGCAAATCCTTTAGATCTCTTTCCACAGGGCCTTCCCAGCATGGGTTCTAATGCTGCTGGTGCAGGCACCTTGGATTTTCTACGCAACAGTCAACAGTTCCAAGCTTTGCGAGCTATGGTGCAGGCAAATCCACAAATCTTGCAGCCTATGCTTCAAGAGCTAGGAAAGCAAAATCCACACCTAATGAGGCTCATTCAAGAGCATCAGGCTGACTTCCTTCGCCTAATAAATGAACCCGTTGAAGGAGCGGAGGGGAACATACTGGCCCCCACAGTGCCGCAGGCAGTGACAGTCACGCCCGAGGAGCGTGAAGCCATTGAACGTCTAGAAGCGATGGGCTTTGATCGAGCAATTGTACTGGAGGTTTTCTTTGCCTGCAACAAGAACGAAGAGCTGGCCGCCAACTATCTTCTAGATCACATCCATGAATTTGAAGAGTGA 1191 0.4903 MKVFVKTLKGSHFEIEVKPDDTVADVKKNIETVHGADVYPAAQQMLIHQGKVLKDATTLDESKVSENSFLVIMLTKSKGSSSGPSTTTAVPISPAPPTSSTPPTSIPALTTPQAPAVTLAPPPSVPEPAPAVAPTVVPPAAPASVISASTESDVYGQAASNLVAGNNFEETIQQILDMGGGNWERDTVVRALRAAYNNPERAVEYLYSGIPEQAEVPPAARPPTSGQAGNPPPAQAPQPAQPAVPSSGPNANPLDLFPQGLPSMGSNAAGAGTLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQEHQADFLRLINEPVEGAEGNILAPTVPQAVTVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHIHEFEE* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl11g01362 396 FunFam UV excision repair protein RAD23 B 264 330 - -
Eupl11g01362 396 SMART uba_6 168 208 IPR015940 -
Eupl11g01362 396 SMART uba_6 352 389 IPR015940 -
Eupl11g01362 396 FunFam UV excision repair protein RAD23 homolog 343 391 - -
Eupl11g01362 396 SUPERFAMILY UBA-like 165 219 IPR009060 GO:0005515
Eupl11g01362 396 SMART ubq_7 1 75 IPR000626 GO:0005515
Eupl11g01362 396 SUPERFAMILY Ubiquitin-like 1 88 IPR029071 -
Eupl11g01362 396 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 349 390 IPR015940 -
Eupl11g01362 396 CDD Ubl_Rad23 1 74 - -
Eupl11g01362 396 Pfam XPC-binding domain 274 329 IPR015360 GO:0003684|GO:0006289|GO:0043161
Eupl11g01362 396 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 385 - -
Eupl11g01362 396 FunFam UV excision repair protein RAD23 homolog 161 211 - -
Eupl11g01362 396 MobiDBLite consensus disorder prediction 77 131 - -
Eupl11g01362 396 Gene3D - 1 80 - -
Eupl11g01362 396 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Eupl11g01362 396 MobiDBLite consensus disorder prediction 116 131 - -
Eupl11g01362 396 SUPERFAMILY UBA-like 339 394 IPR009060 GO:0005515
Eupl11g01362 396 Gene3D - 264 330 IPR036353 GO:0003684|GO:0006289|GO:0043161
Eupl11g01362 396 Gene3D - 344 391 - -
Eupl11g01362 396 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Eupl11g01362 396 CDD UBA1_Rad23_plant 162 211 - -
Eupl11g01362 396 NCBIfam UV excision repair protein Rad23 1 395 IPR004806 GO:0006289
Eupl11g01362 396 PRINTS DNA repair protein Rad23 signature 363 377 IPR004806 GO:0006289
Eupl11g01362 396 PRINTS DNA repair protein Rad23 signature 378 393 IPR004806 GO:0006289
Eupl11g01362 396 PRINTS DNA repair protein Rad23 signature 346 362 IPR004806 GO:0006289
Eupl11g01362 396 PRINTS DNA repair protein Rad23 signature 300 322 IPR004806 GO:0006289
Eupl11g01362 396 CDD UBA2_RAD23_plant 348 390 - -
Eupl11g01362 396 MobiDBLite consensus disorder prediction 214 264 - -
Eupl11g01362 396 SUPERFAMILY XPC-binding domain 270 336 IPR036353 GO:0003684|GO:0006289|GO:0043161
Eupl11g01362 396 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 166 209 IPR015940 -
Eupl11g01362 396 Pfam UBA/TS-N domain 352 387 IPR015940 -
Eupl11g01362 396 Pfam UBA/TS-N domain 169 206 IPR015940 -
Eupl11g01362 396 MobiDBLite consensus disorder prediction 77 94 - -
Eupl11g01362 396 MobiDBLite consensus disorder prediction 224 246 - -
Eupl11g01362 396 FunFam UV excision repair protein RAD23 1 80 - -
Eupl11g01362 396 Gene3D - 161 211 - -
Eupl11g01362 396 SMART CBM 272 315 IPR006636 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl11g01362 Eupl-Chr11 20751878 20779913 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl11g01362 1 85 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 37.647 8.76e-09 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl11g01362 K10839 - ming:122063193 561.607