Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl11g01342 ATGAGCTCTGATAAAAACGTAGCGAAAGCCGTCGGTGCTAAGACGGCGAGAGTCTGCGATAGTTGCATGGATAAACGTGCACGTTGGTATTGCACTGCCGACGACGCTTTTCTCTGCCAAGCCTGTGATGTTTCAGTCCACTCAGCAAACCCATTAGCACGACGACACGAAAGGGTTCGACTCAAGATCGCATCGCTCAAGCCCACTGAACCCGCTTGGCACCAGGGGTTCCACCGTAAGGCGCGAACCCCTCGAAATGTGAAGCCAGCCATGTTGAAAGCACCAAAGGTCGAGGAGCTCACTCTGAACCCTCTTCCTCTTGTGCCTGAAATTGGCAGTGATGAGGCATCACCTGATGAGAATGAAGAACAGCTTCTTTATCGGGTTCCCATATTCAACCCTTGTCTCGCAGAATTCTGCACGTCTGCGACACCGAATGAAGTAGAAACTACTAATTATGATTCAGAAACCATTGGAAGCGACTCGAAAACTCTGTTACCAGACATACCTGGGTTTCTCCCATCTGATATGGATCTATTAGAGTTCGCTGCAGATGTCGATACCTTACTTGGGAGAGGACTTGATGATGAGGACTCGTTCGGCATGGAAGGTTTGGGACTATTGGATTCTAGAGAGGAATATAGTGGAAGGGTAGTGAAGGTGGAGGAGGAAGAAAAAGAGATGGAGTCGGTCCTTTCATTTCATCATGTGGATCCAGAAATTGATATGTCAAGAGAGACGTTGGATTTGAACTTCGACTACAACTCTCCTGCGAGCGAAGAGGAAGAGGACGAGAAGGTGGTGGTTCGAGCAGCGATGATGCTGAACAGTGGATATAAAGATAACATGACGAGAGGGATATCGTTGAGGCTCAACTACAACGCAGTCATCGACGCTTGGGCTAGCCAGGGTTCACCATGGATGACTGGCGATCGGCAACAATTCAACCCCTACGACTGTTGGCCTGACTGTTCGGGAACGTACCCTACAGTTCATCACTCATGCGAGGATCTAGGAGGTGTAGGGGGACATATGGCGATCTGTGATGAAGGAAGAGAAGCTAGGGTGTCAAGGTACAGAGAGAAACGTAGGACACGGTTGTTCTCGAAAAAGATAAGGTACGAAGTTCGGAAACTAAACGCAGAGAAGAGACCCAGAATGAAAGGCCGATTCGTTAAAAGGGCATCCTTGGCAGGACCTTCTTTTCCCTTTTGA 1215 0.4881 MSSDKNVAKAVGAKTARVCDSCMDKRARWYCTADDAFLCQACDVSVHSANPLARRHERVRLKIASLKPTEPAWHQGFHRKARTPRNVKPAMLKAPKVEELTLNPLPLVPEIGSDEASPDENEEQLLYRVPIFNPCLAEFCTSATPNEVETTNYDSETIGSDSKTLLPDIPGFLPSDMDLLEFAADVDTLLGRGLDDEDSFGMEGLGLLDSREEYSGRVVKVEEEEKEMESVLSFHHVDPEIDMSRETLDLNFDYNSPASEEEEDEKVVVRAAMMLNSGYKDNMTRGISLRLNYNAVIDAWASQGSPWMTGDRQQFNPYDCWPDCSGTYPTVHHSCEDLGGVGGHMAICDEGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRASLAGPSFPF* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl11g01342 404 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 10 395 - -
Eupl11g01342 404 Pfam B-box zinc finger 16 59 IPR000315 GO:0008270
Eupl11g01342 404 ProSiteProfiles CCT domain profile. 352 394 IPR010402 GO:0005515
Eupl11g01342 404 CDD Bbox1_BBX-like 18 61 - -
Eupl11g01342 404 ProSiteProfiles Zinc finger B-box type profile. 14 61 IPR000315 GO:0008270
Eupl11g01342 404 SMART bboxneu5 14 61 IPR000315 GO:0008270
Eupl11g01342 404 Pfam CCT motif 352 394 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl11g01342 Eupl-Chr11 19972415 19975610 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl11g01342 5 394 C2C2-CO-like Transcription Factor Family AT1G25440 46.860 9.81e-92 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Eupl11g01342 zf-B_box 1.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl11g01342 - - nnu:104601900 513.072