Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl11g01280 ATGGCGACGCCATTAACGGGCCTTCAACATAGAGATGGAGGTCTTGCTTTAATGGCAGGGCCTGTAAATCCAGTCGATCCTTCTTCGTCTTCTTCATCTTCATCTAAGGCTTGTTTGAAGAACTCTGCACTAAAATCCCCAATCCTTATCTTCTTGTTTTTCCACAAAGCTATCCGGTCCGAGCTTGATGGGCTTCACCGCGCGGCCATGGCTTTTGCGACTGACCCAAATGGCGACATCGGGCAGTTGGTCGAGCGGTGCCATTTCCTTCGGACAATCTACAAGCACCACTGCAATGCTGAGGACGAGGTCATCTTTCCAGCTCTTGATATACGCGTGAAGAACGTAGCACGAACGTACTCCCTCGAGCACAAGGGAGAAAGTGATCTTTTTGATCAATTGTTCGAGTTGCTGAATTCAAATACGCAAAATGATGAAAGCTTTCGGAGAGAGTTAGCTTCTTGTACAGGAGCCCTTCAAACATCGGTTAGCCAGCACATGTCCAAGGAGGAGGATCAGGTCTTCCCCTTGCTTATTGATAAGTTCTCATTCGAAGAACAGGCATCATTGGTCTGGCAGTTTTTGTGCAGCATTCCTGTGAATATGATGGCAGAGTTCCTTCCATGGCTATCTTCTTCTATTCCATCTGATGAGCATCAGGATATGCTGAAATGCTTACGCAAGATAGTGCCACAAGAAAGGCTTCTTCAACAGGTTATATTCACCTGGATGGAAGGGAGAAACATATCTAGTATGCATAAACGTTGTGACGGTGGTTCTCAGATCCAGTGTTGTGAAGATTCTGAGACTGGCACATTAGTTGAACAAACTTTGAAAGGGCAGTGTGCATGTGAATCATCCAAGATTGGGAAAAGGAAATATCTGGGGTCAAACTGTGATGTTATTGATTCAACTGAAGCAAATCCCATAAATGAAATATTGCATTGGCATAATGCAATAAAAAGAGAGTTGAATGATATAGCTGAGGAGGCTAGGAAGATTCAACTTCGCGGAGATTTTTCTGATTTATCAGCCTTCAATGAGAGGCTACAATTTATCGCTGAAGTGTGCATCTTCCACAGTATTGCTGAGGACAAGGTTATATTCCCTGCAGTAGATGGGGAACTCTCTTTTGCCCAGGAGCATGCTGAGGAAGAAAGTCAATTTGACAAATTTAGGTGCTTGATAGAAAATATTCAAAGTGCGGGAGCCAAGTCAACTTCAGCTGAATTTTATACAAAGCTATGCTCACATGCTGATCATATAATGGAAACTATTCAGAAGCACTTCCACAATGAGGAAGTTCAGGTTCTTCCCCTTGCCCGGAAGCATTTTAGTCCTAAAAGACAGCGAGAACTTCTGTATCAGAGCTTATGTGTGATGCCTTTGAAATTGGTGGAGCGTGTCTTACCATGGTTGGTAGGATTACTAAGTGAAGAAGATGCAAGGTCTTTTCTTCAAAATATGCATTTGGCAGCTCCAGCATCTGATACCGCACTGGTTACACTTTTCTCTGGTTGGGCCTGCAAGGGTCGTTCCCAGGATGTGTGTTTGTCTTCAAGTGTAATTGGTTGCTGTCCGGTAAAAAAACTGACTGAAACTGAAGAAGATTTTAGTCAACCATCCTGTGCATGTGCTTCTCCCTTGCCTATGAATGGAAAGCCGTTATTGGATCAAGGGGATGAAGACAAAAGGCCAGTTAAACGTGGCAACTTCTCAGGATCATGTGAAAATAGCAATGCCTGTGACCTGCCAGAAACTGTAAATGCACGGAAACTGTCTTGTAGTAATCAGGTTTGCTGTGTCCCTGGGTTAGGAGTGAACAGCAGTAACCTGGGAATAAGTTCACTTGCTTCTGCGAAGTCATTGCGTTCCTTATCTTTCAGTCCTTCTGCTCCTTCTCTTAATTCCAGTCTTTTTATCTGGGAAACAGATTTTAGCTCTTCAGATGTTGGTTATACGCCACGACCCATTGACAACATATTTAAATTTCATAAAGCCATCTGCAAAGACTTGGAGTATCTGGACGTTGAATCTGGAAAGCTTAATGGCTGTGACGAGACATTCCTTCGGCAGTTCAGTGGGCGATTTCGTTTGTTGTGGGGCTTATATAGAGCTCATAGTAATGCTGAGGATGAGATAGTTTTCCCAGCACTAGAATCCAAAGAGGCTCTTCATAATGTGAGCCACTCTTACACACTGGACCACAAGCAGGAGGAAAAACTATTCGAAGATATTTCATCTGTTCTTTCTGAACTTTCACAACTTCATGAAGGCATGAACAGGACCAATCTGTCTGAAGATTCAACGGGAACTAACTTTGATTATTCTGCTGGTAATGGTAATGATTATATGCGAAAGTACCATGAGCTTTCTACAAAGCTTCAAGGCATGTGCAAGTCAATAAGAGTCACACTGGACCAGCATATTTTCAGAGAAGAACTTGAGCTGTGGCCGTTGTTTGACAGACATTTTCCTGTGGAGGAGCAGGACAAAATTGTTGGCCGTATAATTGGGACAACAGGTGCGGAGGTGCTCCAGTCAATGTTACCGTGGGTAACTTCTGCACTTACTCAGGAGGAGCAGAACAAAATGATGGACACGTGGAAGCAGGCGACAAAAAATACAATGTTCAGTGAGTGGCTTAATGAATGGTGGAAAGGAATTCCCGTGGCTTCTTCACAGACTGATATGTCGGAGAGCTGTGTTTCTCAAGAAGACCCCGATATTCAAGAAAGCCTGGACCAGAGTGATCGGATGTTCAAGCCTGGCTGGAAAGACATTTTTCGGATGAATCAAAATGAGCTTGAGTCGGAAATAAGAAAGGTTTCACGAGACTCAACACTTGATCCAAGGAGAAAAGCTTATCTTATACAAAATCTTATGACCAGCCGCTGGATAGCTGCTCAGCAGAAGTTACCTGAAGCAAGAACAGGGGAAACTACAAATTGTGAAGATGTACCTGGATGCTCTCCATCGTTTCGAGATCCAGAGAAGCAAGTGTTTGGGTGTGAGCACTACAAAAGAAACTGCAAACTCCTTGCTGTTTGCTGTAACAAATTGTTTACTTGCAGGTTCTGCCATGATAAAGTCAGTGATCACTCAATGGATAGGAAAGCGACATCAGAAATGATGTGCATGCGCTGCCTAAAGATTCAGGCAGTTGGACCAATTTGTACGACCCCTTCTTGCAATGAACTTTCAATGGCAAAATACTACTGCAATATATGTAAACTTTTTGATGATGAAAGGGCAGTGTACCATTGCCCATTTTGCAATTTATGCCGTCTTGGAAAGGGACTTGGCACAGACTTCTTTCATTGCATGAAATGCAATTGTTGCCTGGGGATGAAGTTATTGGACCACAAATGCCGGGAGAAAGGTCTAGAAACAAACTGCCCCATCTGCTGTGACTTTTTATTCACATCAAGTGCAGCGGTCCGAGCTCTACCTTGTGGTCATTTTATGCATTCAGCTTGTTTTCAGGCATACACTTGCAGCCACTACACCTGTCCAATATGTAGCAAATCCTTGGGAGATATGGCGGTATACTTTGGCATGCTTGATGCTTTGTTGGCTGCTGAAGAGCTTCCGGAAGAATACAGGGATCGCTGTCAGGATATACTGTGCAATGACTGCAATAAGAAGGGGACGGCATGCTTCCATTGGTTGTACCATAAATGCGGGTTTTGTGGATCATACAACACTAGAGTGATCAAGGGTGATTTGGAGAATTGCTCAACATCAAATTAG 3753 0.4357 MATPLTGLQHRDGGLALMAGPVNPVDPSSSSSSSSKACLKNSALKSPILIFLFFHKAIRSELDGLHRAAMAFATDPNGDIGQLVERCHFLRTIYKHHCNAEDEVIFPALDIRVKNVARTYSLEHKGESDLFDQLFELLNSNTQNDESFRRELASCTGALQTSVSQHMSKEEDQVFPLLIDKFSFEEQASLVWQFLCSIPVNMMAEFLPWLSSSIPSDEHQDMLKCLRKIVPQERLLQQVIFTWMEGRNISSMHKRCDGGSQIQCCEDSETGTLVEQTLKGQCACESSKIGKRKYLGSNCDVIDSTEANPINEILHWHNAIKRELNDIAEEARKIQLRGDFSDLSAFNERLQFIAEVCIFHSIAEDKVIFPAVDGELSFAQEHAEEESQFDKFRCLIENIQSAGAKSTSAEFYTKLCSHADHIMETIQKHFHNEEVQVLPLARKHFSPKRQRELLYQSLCVMPLKLVERVLPWLVGLLSEEDARSFLQNMHLAAPASDTALVTLFSGWACKGRSQDVCLSSSVIGCCPVKKLTETEEDFSQPSCACASPLPMNGKPLLDQGDEDKRPVKRGNFSGSCENSNACDLPETVNARKLSCSNQVCCVPGLGVNSSNLGISSLASAKSLRSLSFSPSAPSLNSSLFIWETDFSSSDVGYTPRPIDNIFKFHKAICKDLEYLDVESGKLNGCDETFLRQFSGRFRLLWGLYRAHSNAEDEIVFPALESKEALHNVSHSYTLDHKQEEKLFEDISSVLSELSQLHEGMNRTNLSEDSTGTNFDYSAGNGNDYMRKYHELSTKLQGMCKSIRVTLDQHIFREELELWPLFDRHFPVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQEEQNKMMDTWKQATKNTMFSEWLNEWWKGIPVASSQTDMSESCVSQEDPDIQESLDQSDRMFKPGWKDIFRMNQNELESEIRKVSRDSTLDPRRKAYLIQNLMTSRWIAAQQKLPEARTGETTNCEDVPGCSPSFRDPEKQVFGCEHYKRNCKLLAVCCNKLFTCRFCHDKVSDHSMDRKATSEMMCMRCLKIQAVGPICTTPSCNELSMAKYYCNICKLFDDERAVYHCPFCNLCRLGKGLGTDFFHCMKCNCCLGMKLLDHKCREKGLETNCPICCDFLFTSSAAVRALPCGHFMHSACFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLAAEELPEEYRDRCQDILCNDCNKKGTACFHWLYHKCGFCGSYNTRVIKGDLENCSTSN* 1251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl11g01280 1250 Pfam Ring finger domain 1132 1174 IPR001841 -
Eupl11g01280 1250 SMART ring_2 1133 1174 IPR001841 -
Eupl11g01280 1250 Pfam CHY zinc finger 1004 1079 IPR008913 GO:0008270
Eupl11g01280 1250 CDD RING-H2_Pirh2-like 1132 1175 - -
Eupl11g01280 1250 CDD Hr-like 50 176 - -
Eupl11g01280 1250 Gene3D nmb1532 protein domain like 310 457 - -
Eupl11g01280 1250 Gene3D nmb1532 protein domain like 46 196 - -
Eupl11g01280 1250 Pfam Hemerythrin HHE cation binding domain 657 820 IPR012312 -
Eupl11g01280 1250 Pfam Hemerythrin HHE cation binding domain 52 178 IPR012312 -
Eupl11g01280 1250 Pfam Hemerythrin HHE cation binding domain 309 441 IPR012312 -
Eupl11g01280 1250 FunFam Zinc finger protein-related isoform 1 1128 1177 - -
Eupl11g01280 1250 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1128 1177 IPR013083 -
Eupl11g01280 1250 Gene3D nmb1532 protein domain like 654 894 - -
Eupl11g01280 1250 ProSiteProfiles Zinc finger CHY-type profile. 997 1066 IPR008913 GO:0008270
Eupl11g01280 1250 CDD Hr-like 312 439 - -
Eupl11g01280 1250 Gene3D - 1204 1245 - -
Eupl11g01280 1250 SUPERFAMILY RING/U-box 1130 1186 - -
Eupl11g01280 1250 SUPERFAMILY CHY zinc finger-like 997 1060 IPR037274 GO:0008270
Eupl11g01280 1250 ProSiteProfiles Zinc finger CTCHY-type profile. 1069 1132 IPR017921 -
Eupl11g01280 1250 ProSiteProfiles Zinc finger RING-type profile. 1133 1175 IPR001841 -
Eupl11g01280 1250 Coils Coil 317 337 - -
Eupl11g01280 1250 SUPERFAMILY ARM repeat 128 475 IPR016024 -
Eupl11g01280 1250 CDD Hr-like 661 819 - -
Eupl11g01280 1250 SUPERFAMILY Zinc hairpin stack 1070 1125 IPR037275 -
Eupl11g01280 1250 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 700 1240 - -
Eupl11g01280 1250 Pfam Zinc-ribbon 1180 1237 IPR039512 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl11g01280 Eupl-Chr11 18706430 18721834 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl11g01280 1 1250 C2H2 Transcription Factor Family AT3G18290 68.067 0.0 1691
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl11g01280 K16276 - nnu:104609887 2127.83