Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl11g01245 ATGATGATTTCCAGCATTCAACTTCGAACAATAGCGACGTTGGCCGTGCTTCCTGAATCCCATCTTCCAAAGTCGGTTTATTTCCAAACTGTATCATGCCCTTTGAGTTCAGGTGCATCCGATGGCGACTGTTTTTCGGAGATTTTCAAAGCTTTGTCGGATGTGGAGCTGAGTTCTACGCAGCCGTTACCGACCACGATGAGAGTTGCACCGGAAGCTGAGTTTTCGGTGGGTTCGGAAAAGGGGAATTCGAGTGGGGGCAAAAGGAAAATTGAGGATTTGGGGTGTCAAATCGAAGGTGTTGAAGGGGAGTTTGAAGTTTTTAATAGAAAGCAGTATAACTTGAGTAAGCGGAATCGGACTGCAGAAGTGCACAATTTGTCTGAGAGGAAGCGAAGGGACCGTATCAAGGGGAAGATGAGAACCTTGCAGGAACTTATACCCAACTGTAATAAGGTACTACAAAATTTCAAGAATGTATACCTTCCCCTTTTTGTTAATAAGGAATCCAGTGGCACGTTCACCATCATCATCCATGAACGTGCATCGTCCTTGCTTATGACTACCTTTCTTACCATCAGTCAGACAAAGCTTCCATGCTGGATGGGGCCATCGAATATCTTAAAGCCCTTCAACTGCAAGTGCAAAAGTCATTCCCAACTGGTTTAA 669 0.4484 MMISSIQLRTIATLAVLPESHLPKSVYFQTVSCPLSSGASDGDCFSEIFKALSDVELSSTQPLPTTMRVAPEAEFSVGSEKGNSSGGKRKIEDLGCQIEGVEGEFEVFNRKQYNLSKRNRTAEVHNLSERKRRDRIKGKMRTLQELIPNCNKVLQNFKNVYLPLFVNKESSGTFTIIIHERASSLLMTTFLTISQTKLPCWMGPSNILKPFNCKCKSHSQLV* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl11g01245 222 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 117 152 IPR036638 GO:0046983
Eupl11g01245 222 PANTHER TRANSCRIPTION FACTOR PIF3 76 153 IPR044273 GO:0003700|GO:0006355
Eupl11g01245 222 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 120 189 IPR011598 GO:0046983
Eupl11g01245 222 Gene3D - 111 173 IPR036638 GO:0046983
Eupl11g01245 222 Pfam Helix-loop-helix DNA-binding domain 124 148 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl11g01245 Eupl-Chr11 17729225 17784652 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl11g01245 76 153 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 53.684 4.49e-17 77.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Eupl11g01245 HLH 8.9e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl11g01245 K12126 - tss:122646256 112.079