Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl11g01239 ATGGATTCAAATACTGAATCGTCCTTCTTTTTGGATCCTCCCTCTCACCACTCTTTTTGCCATGAAGTGAAGGAGGATGGCATTATGATTGATCTGGGTCTCAGTCTTGGAACTTCTCTGCAACCGGAACCATACCATCCATCAGGAGTTGTAAGCGCAGCGGAATATGGTGAGTTTATGGATTGGCCCCAGCTGGATTCGTATATGAAAGGCTCGAATGTGGGATATCGGATGATGATTCCTGAAGAGTATGATGATGAGACGGAGGGAGTGCAAAGCAAAGAACGGTGGGCTTACGTGAAGGTTAACATGGAGGGGGTTGTTGTTGGGAGGAAAATCTGCATCCTTGATCACTCTGGTTACTCCAGCCTTGCACTCCAACTGGAAGACATGTTTGGTAGACAATGCATGTCCGGGTTACGTTTGTTGGACGCGGAGTCGAAGTTTTCGTTGTTTTATAAAGACACAAATGAGAATTGGAGGGCTGTTGGTGATGTCCCATGGAAGGAGTTTGTGGACTGCGTGAAGCGGTTGAGGATTGCACGCAAAGATATGCTAGATGAAGCTCTCTTTCCTTCTTCGTCTTCTTTACCTACCTAA 600 0.4633 MDSNTESSFFLDPPSHHSFCHEVKEDGIMIDLGLSLGTSLQPEPYHPSGVVSAAEYGEFMDWPQLDSYMKGSNVGYRMMIPEEYDDETEGVQSKERWAYVKVNMEGVVVGRKICILDHSGYSSLALQLEDMFGRQCMSGLRLLDAESKFSLFYKDTNENWRAVGDVPWKEFVDCVKRLRIARKDMLDEALFPSSSSLPT* 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl11g01239 199 Gene3D - 91 192 - -
Eupl11g01239 199 SUPERFAMILY CAD & PB1 domains 97 180 - -
Eupl11g01239 199 ProSiteProfiles PB1 domain profile. 97 185 IPR000270 GO:0005515
Eupl11g01239 199 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 54 184 IPR003311 GO:0005634|GO:0006355
Eupl11g01239 199 Pfam AUX/IAA family 60 182 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl11g01239 Eupl-Chr11 17629847 17631675 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl11g01239 92 180 B3 DNA Binding Superfamily AT1G19220 37.079 2.24e-09 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Eupl11g01239 AUX_IAA 6.5e-21 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl11g01239 K14484 - vvi:100257765 243.047