Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl11g01238 ATGGCTGGTGTTGCAGATAACCCATCAACAACTGCAGGGGAGCATATTAGATTCAGGAGACATAGAAACCAACCCAACTCACCTTCAGATCCAAACCCTGAAAGCTCTCCTCTTCTTCGAACTACTCGCTGTAAACCCACTATCTCTTCTCTTTTTCTTTCTACTTTCACTACCAACAACAACAACAACAACAACAACAACAACAACAGCAATGGTTCCAACATGGGTTCTAGTATGTCTTCAGTGTTGAAGAGTAAAAAGAAGAACTTTACATCTGCGACATTAAGAGGGCTTGGATGTGCGACGTCTTCGCAGGTGTCGGCACCAGCGGTTATTCGTTCTTCGGCAGATTGGCAAGCTAAGAAAGTTAGGAAAAAGAAGCAGAGGAATCCACACAGGAAGAAGAATCACCAGCAAACCATGACTGCATCGACCAACAACCCAACTCCTGTTGTTGTTGTTCCTGATGTTTGGTGTGCTCCCGGGATCGCTTTTACTGGAGATGCCGCTTCGGTCGATTGTGTTGTGTCGAGGAGGCCGGTGCAGGGTAGAGGGAGAGCTGATGGAGGAGAGAGGGGGAATCACAGAGAGCGTTCTTGCATTGCAAGGCGGACTGCCAACCTTGAACACTTATCTGTTATGGATTCCCCATCAACCTTTGAAACAACACGCTATGGATCTGATGTATTTGGAGGTAGGCATCATCGTCATTTTCGACATCGTTCTCCTGGAGGGCTCGCAGAGATCATGATGTTCCAAAGTAGCATGCTGTTGGGAGGAAGATCTGATGGATATGATCGATACAGGGACTGGCGGCTCGATGTAGATAATATGTCATATGAGGAATTGCTCGAACTGGGTGATAGAATCGGGTATGTAGGCACTGGGTTGAGAGAAGATGAGATATTCCGCTGCCTCAGGAAAATCAAGCACTCGATTTTAGTTGCTCTGCCATCGCATTTCCCCACCGAGATGGAGTGGAAATGTAGCATTTGTCAAGAGGAATATGGAACAGATGATGATGTGGGGAAGCTGGATTGCGGCCACAGCTATCACATATGTTGCATTAAGCAGTGGCTTCTGCAGAAGAACGCCTGCCCCATTTGCAAGGTAGCTGCAATGGCTCAATAG 1131 0.4713 MAGVADNPSTTAGEHIRFRRHRNQPNSPSDPNPESSPLLRTTRCKPTISSLFLSTFTTNNNNNNNNNNNSNGSNMGSSMSSVLKSKKKNFTSATLRGLGCATSSQVSAPAVIRSSADWQAKKVRKKKQRNPHRKKNHQQTMTASTNNPTPVVVVPDVWCAPGIAFTGDAASVDCVVSRRPVQGRGRADGGERGNHRERSCIARRTANLEHLSVMDSPSTFETTRYGSDVFGGRHHRHFRHRSPGGLAEIMMFQSSMLLGGRSDGYDRYRDWRLDVDNMSYEELLELGDRIGYVGTGLREDEIFRCLRKIKHSILVALPSHFPTEMEWKCSICQEEYGTDDDVGKLDCGHSYHICCIKQWLLQKNACPICKVAAMAQ* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl11g01238 376 MobiDBLite consensus disorder prediction 25 40 - -
Eupl11g01238 376 Pfam Ring finger domain 328 370 IPR001841 -
Eupl11g01238 376 ProSiteProfiles Zinc finger RING-type profile. 329 370 IPR001841 -
Eupl11g01238 376 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 47 374 IPR045191 GO:0061630
Eupl11g01238 376 SUPERFAMILY RING/U-box 318 372 - -
Eupl11g01238 376 SMART ring_2 329 369 IPR001841 -
Eupl11g01238 376 MobiDBLite consensus disorder prediction 120 136 - -
Eupl11g01238 376 MobiDBLite consensus disorder prediction 113 148 - -
Eupl11g01238 376 MobiDBLite consensus disorder prediction 55 84 - -
Eupl11g01238 376 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 307 375 IPR013083 -
Eupl11g01238 376 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl11g01238 Eupl-Chr11 17609338 17616714 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl11g01238 13 281 C3H Transcription Factor Family AT1G73760 36.644 2.14e-41 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl11g01238 - - tss:122645887 483.411