Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl11g01234 ATGGTGGATACAATGTTTGCATTTGTCCAAGTGGGGCTCGGTAACATGGAGAGTAATCTAGTCAAATCACCTAAAACCCTAGCTCTCAACTCAATTCTCGCTACCCTAAGAGAGAGACAGAGGGAGACCGGTGTTACTGCCTCTGTTACCGAGTTGTTTCATCTCAAGAAAGAGAGAGCAGCCATGAAGTACAACCCACGGGTTTCGAGCTCCCGGCGCAAATGCCGGAAGGCGCACTTCACCGCCCCGTCTAGCGTGCGCCGGGTGCTGATGAGCGCTCCGCTCTCATCCGACCAACGGAACAAATACAACGTGCGGTCCGTGCCGGTGAGGAAGGACGACGAGGTGCAGGTGGTGCGTGGGACCTACAAGGGCAGAGAAGGCAAGGTCGTCCAGGTGTACCGTCGCAAATGGGTCATCCACGTGGAGCGAATCACTCGGGAGAAGGTTAATGGGTCCACCGTCAACGTCGGCATCAACCCCTCCAAAGTCATCGTCACCAAGCTGAAGCTCGACAAGGACCGCAAGTCCCTCCTCGATCGCAAGGCCAAGGGCCGTGCGGCAGACAAGGCCAAGGGCAAGTTCACCGCCGAAGATGTCGCAGCTGCTGCCTCCGCTCCTTCCCTTCAAGAGGTCGATTAA 642 0.5654 MVDTMFAFVQVGLGNMESNLVKSPKTLALNSILATLRERQRETGVTASVTELFHLKKERAAMKYNPRVSSSRRKCRKAHFTAPSSVRRVLMSAPLSSDQRNKYNVRSVPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHVERITREKVNGSTVNVGINPSKVIVTKLKLDKDRKSLLDRKAKGRAADKAKGKFTAEDVAAAASAPSLQEVD* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl11g01234 213 SMART kow_9 109 136 IPR005824 -
Eupl11g01234 213 NCBIfam 50S ribosomal protein L24 69 183 IPR005756 GO:0003735|GO:0006412|GO:0015934
Eupl11g01234 213 PANTHER 60S RIBOSOMAL PROTEIN L26 FAMILY MEMBER 62 201 IPR005756 GO:0003735|GO:0006412|GO:0015934
Eupl11g01234 213 SUPERFAMILY Translation proteins SH3-like domain 69 186 IPR008991 -
Eupl11g01234 213 CDD KOW_RPL26 113 164 IPR041988 GO:0003723
Eupl11g01234 213 Pfam Ribosomal proteins L26 eukaryotic, L24P archaeal 69 182 IPR005756 GO:0003735|GO:0006412|GO:0015934
Eupl11g01234 213 ProSitePatterns Ribosomal protein L24 signature. 113 130 IPR005825 GO:0003735|GO:0005840|GO:0006412
Eupl11g01234 213 Gene3D - 62 204 IPR014722 -
Eupl11g01234 213 FunFam 60S ribosomal protein L26 62 203 - -
Eupl11g01234 213 Pfam KOW motif 112 143 IPR005824 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl11g01234 Eupl-Chr11 17494264 17495441 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl11g01234 62 200 Cytoplasmic Ribosomal Protein Gene Family AT3G49910 83.688 8.02e-83 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl11g01234 K02898 - nnu:104613310 261.536