Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl11g01226 ATGGAAATATATTGTGGAGCTGTCAACTATACGAGGGTATTCATGCCCGGTTCCCTTCAGACCGAGCATGTTTCCTCTCGAAGCCTCTATTTAAAGCTGCTCCCTCCTCATTTTTTCAACTCCGTTTCCCTCTCGCTCTGTTCTCTCTCCCTCCCTCTGCTCTCTGAGAAACCAGAGAGTTCTTATTCTCATACTCGCCGCTTCAGACAAATGCAGAGAGACGGGTATTCCGCCGATGGAGGCAACAACGCGACGATTTCGTCACCAGTCCGATCTCAAAATCAACGGCTCTCGTCACCGCACCAAAATCCATCCAACGGCATCGGATTCACCTCGCTCGACTCCTCCATCTTCCCTTCAAAAACATCTCTCCCGAGCTCCGTTTCCCTCACTCCCTCCGCTTGCTCCTGCGACGAAGAAAACAACGCAAATGCCACAGAGAACCGCCTCTACCTTGCACGCCTCACCTTAGAATATCAAGAACTTGTCGACCGGTACGGCTTATGCCTCACTCATCTACAAGAAGCCGCCAGAGAAGTCGACGTCCTTCGTCAAGAAAACGCGAATCTTCGTATGGCGAACAAGGATCTGACCAAGCGTTTGAGCCTCTTGGCTCATACTTCGCTCCAAAACCGCTATCTCTCGTCGGATTTTTCGTCTCTGTCGATCATTAATGATTTCCGTAGTCTGTGCGTTGGAGATAACAGACGCAACAGCCGCGTTTCAGGTGAAGTTTCGGAGGCCAGTCCAACGAGTGTTATTGAGAGTAATCAGTTCGAGAGGAGGAGTGGGGAGCGGGTTGCGTTGCCGAAGAGCATTTCGGTTCGTTCGAGTGGGTACTTGAAGGTGAATCAATCTGGCTCTGGTGGGAGCAGTTCCGGTTCCAGTTCGAATCGCACCAACCGACTTCGTGTCGCAAGTCCAGTCATGAACGAAACGCAACGTGTGTACGTGCCTAGGGGGAAGAAAGAGGAGGAAGCACTAGAGTTGGAGGTTTACAATCAAGGGATGCTCAAGACAGAGCTGTGCAACAAGTGGCAGGAGATGGGGAGCTGTCCTTATGGGGAACACTGCCAGTTCGCTCATGGAATCGGTGAGCTCCGACCTGTAATCCGCCATCCGCGCTACAAGACCGAGGTCTGCCGGATGGTCCTTTCTGGCGACTCCTGTCCCTACGGTCACCGCTGCCACTTCCGCCATGCTCTCACTGAGCAGGAGAGGTTCATGGGTGCTTAG 1236 0.5251 MEIYCGAVNYTRVFMPGSLQTEHVSSRSLYLKLLPPHFFNSVSLSLCSLSLPLLSEKPESSYSHTRRFRQMQRDGYSADGGNNATISSPVRSQNQRLSSPHQNPSNGIGFTSLDSSIFPSKTSLPSSVSLTPSACSCDEENNANATENRLYLARLTLEYQELVDRYGLCLTHLQEAAREVDVLRQENANLRMANKDLTKRLSLLAHTSLQNRYLSSDFSSLSIINDFRSLCVGDNRRNSRVSGEVSEASPTSVIESNQFERRSGERVALPKSISVRSSGYLKVNQSGSGGSSSGSSSNRTNRLRVASPVMNETQRVYVPRGKKEEEALELEVYNQGMLKTELCNKWQEMGSCPYGEHCQFAHGIGELRPVIRHPRYKTEVCRMVLSGDSCPYGHRCHFRHALTEQERFMGA* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl11g01226 411 Coils Coil 173 200 - -
Eupl11g01226 411 MobiDBLite consensus disorder prediction 242 258 - -
Eupl11g01226 411 SMART c3hfinal6 337 364 IPR000571 GO:0046872
Eupl11g01226 411 SMART c3hfinal6 375 402 IPR000571 GO:0046872
Eupl11g01226 411 ProSiteProfiles Zinc finger C3H1-type profile. 375 403 IPR000571 GO:0046872
Eupl11g01226 411 Gene3D - 332 370 - -
Eupl11g01226 411 Gene3D - 371 407 - -
Eupl11g01226 411 FunFam zinc finger CCCH domain-containing protein 15-like 331 370 - -
Eupl11g01226 411 ProSiteProfiles Zinc finger C3H1-type profile. 337 365 IPR000571 GO:0046872
Eupl11g01226 411 MobiDBLite consensus disorder prediction 74 105 - -
Eupl11g01226 411 SUPERFAMILY CCCH zinc finger 371 406 IPR036855 GO:0046872
Eupl11g01226 411 MobiDBLite consensus disorder prediction 239 259 - -
Eupl11g01226 411 SUPERFAMILY CCCH zinc finger 334 369 IPR036855 GO:0046872
Eupl11g01226 411 MobiDBLite consensus disorder prediction 76 105 - -
Eupl11g01226 411 FunFam Zinc finger protein 36, C3H1 type-like 1 371 407 - -
Eupl11g01226 411 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 339 363 IPR000571 GO:0046872
Eupl11g01226 411 PANTHER CCCH ZINC FINGER/TIS11-RELATED 157 407 IPR045877 GO:0003729
Eupl11g01226 411 MobiDBLite consensus disorder prediction 280 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl11g01226 Eupl-Chr11 17391855 17395611 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl11g01226 160 411 C3H Transcription Factor Family AT1G68200 50.579 3.96e-71 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Eupl11g01226 zf-CCCH 7e-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl11g01226 K18753 - nnu:104591328 443.351