Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl11g01216 ATGGGCTTATATAGTCATCTGAACGACGTATCATCGGACTCGATCCCTCTACTTATGGTGGCAGTCGTGGCCAACTGCGTATGTTATCTTCGAACCTTGCTTTTTGGGCTCCTCCAATCGATGGGGTTCTCTCGATTCGATGCGGTGGGAGAGGTGGTAGGTGATGGGCTATTGGGCGCCGTCGGGTCAGGTTTGGCCGGCTTTATTATCATGGCCGAACAGCTTAACGTGAATCGTGTTTTTTCTTATAGTGCTGATGAGGGTGGTGAGGGGGATGACTATTGCGTCGTGTGTTTGTGTCGGTTAATGGAAGGGGACCTAGTGCGCAAGTTAGCATGCCGCCATGTGTTTCATAAGGAGTGTTTGGATGGGTGGTTGTTCGATCAGCTCAATTTGAATTGCCCGCTTTGTCGTTCACCGTTGGTTTCTCAAGAGCAAGTCGCCGCCACTGAGAAACGTGTCTCCGGGGACCTAGTCACGTGGTTCTCTACGCGTTGTTGA 501 0.511 MGLYSHLNDVSSDSIPLLMVAVVANCVCYLRTLLFGLLQSMGFSRFDAVGEVVGDGLLGAVGSGLAGFIIMAEQLNVNRVFSYSADEGGEGDDYCVVCLCRLMEGDLVRKLACRHVFHKECLDGWLFDQLNLNCPLCRSPLVSQEQVAATEKRVSGDLVTWFSTRC* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl11g01216 166 ProSiteProfiles Zinc finger RING-type profile. 95 138 IPR001841 -
Eupl11g01216 166 SMART ring_2 95 137 IPR001841 -
Eupl11g01216 166 SUPERFAMILY RING/U-box 89 144 - -
Eupl11g01216 166 PANTHER RING ZINC FINGER PROTEIN-RELATED 85 150 - -
Eupl11g01216 166 Pfam Ring finger domain 94 138 IPR001841 -
Eupl11g01216 166 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 148 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl11g01216 Eupl-Chr11 17146692 17147842 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl11g01216 1 163 C3H Transcription Factor Family AT1G15100 47.853 3.43e-42 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl11g01216 K16282 - vvi:100262985 234.187