Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl11g01184 ATGGCTTCTCGCAAGGTTCTTGCCTCTCTCCTCCGATCGTCCGTACGCCGCCCTGCGTCGAAACCCTCGATCATCAACCCTAGAACTCCATCGCCGTCTCCAGCATCTCGCCCTTCTCCGAAGGGTTTTCTCCTCAACCGCGCTGTAGATTACGCAACTGCCGCTGCAGCTCCGGCACCGTCGTCGGCTCCATCGCCACCGCCGACGAAGGGAGCTGGCCCAAGCGGCAAGATTACTGATGAGTTCACCGGCGCCGGATCGATCGGCAGTGTGTGTCAGGTTATCGGTGCCGTCGTCGATGTTCGATTTAAAGAGGGATTGCCGCCGATCTTGACAGCTCTCGAGGTTTTGGACAATTCGATCCGTTTGGTCCTCGAAGTCGCACAGCATTTGGGAGAGAACATGGTGAGGACGATTGCCATGGACGGTACTGAGGGGCTCGTGCGAGGTCAAAGGGTCCTAAACACCGGTTCTCCGATCACTGTGCCTGTGGGTAGGGCTACCCTTGGTCGCATTATGAATGTTATTGGAGAGCCTATCGACGAGAGGGGAGAACTGAAAACTGATCACTTCCTGCCCATCCATCGTGAAGCCCCTTCATTTGTTGAACAAGCCACTGAACAACAGATCCTTGTTACTGGTATCAAGGTTGTGGATCTCCTTGCGCCATACCAAAGAGGTGGAAAGATTGGGCTGTTTGGTGGTGCTGGTGTAGGAAAGACAGTGCTTATTATGGAGCTGATCAACAATGTTGCTAAAGCTCATGGTGGTTTCTCTGTCTTTGCTGGCGTCGGGGAACGTACCCGAGAGGGTAACGATCTGTACAGGGAAATGATTGAGAGTGGTGTCATTAAGCTCGGGGATAAGCAGGCTGAAAGCAAGTGTGCTCTTGTGTACGGTCAAATGAATGAACCCCCTGGTGCTCGTGCACGTGTTGGGCTTACCGGGCTAACTGTGGCTGAGCACTTCCGAGATGCTGAAGGGCAAGATGTGCTTCTCTTCATTGACAACATATTCCGTTTTACCCAAGCAAACTCTGAGGTGTCTGCTTTGCTTGGTCGTATTCCATCCGCTGTCGGTTACCAACCAACTTTGGCTACAGATCTTGGAGGCCTGCAAGAGCGTATCACTACCACAAAGAAAGGTTCTATCACATCTGTCCAAGCTATTTATGTGCCTGCCGATGACTTGACAGATCCAGCTCCTGCAACCACCTTTGCCCATCTGGATGCCACAACAGTGTTGTCCCGACAGATCTCTGAGCTTGGTATCTATCCTGCCGTTGATCCCCTGGATTCTACATCTCGTATGCTCTCTCCTCATATTTTGGGAGAAGAACACTACAACACTGCTCGTGGTGTACAGAAGGTTCTTCAGAACTACAAGAATCTTCAAGATATTATTGCCATTTTGGGAATGGATGAGCTCAGTGAAGATGACAAGTTGACCGTCGCTCGTGCTCGTAAAATTCAAAAGTTCCTGAGTCAGCCTTTCCATGTTGCAGAAGTGTTCACGGGTGCCCCTGGAAAGTATGTGGAATTGAAAGAGAGCATTACCAGTTTCCAGGGTGTTTTGGATGGAAAATATGACGACGTTTACGAGCAATCATTTTACATGGTTGGAGGAATTGAAGAGGTCATTGCCAAGGCTGAGAAGATTGCCAAGGAGTCTGCTGCTTAA 1680 0.506 MASRKVLASLLRSSVRRPASKPSIINPRTPSPSPASRPSPKGFLLNRAVDYATAAAAPAPSSAPSPPPTKGAGPSGKITDEFTGAGSIGSVCQVIGAVVDVRFKEGLPPILTALEVLDNSIRLVLEVAQHLGENMVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRATLGRIMNVIGEPIDERGELKTDHFLPIHREAPSFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQAESKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQKFLSQPFHVAEVFTGAPGKYVELKESITSFQGVLDGKYDDVYEQSFYMVGGIEEVIAKAEKIAKESAA* 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl11g01184 559 FunFam ATP synthase subunit beta 438 557 - -
Eupl11g01184 559 Pfam ATP synthase alpha/beta family, beta-barrel domain 91 157 IPR004100 GO:0046034|GO:1902600
Eupl11g01184 559 PANTHER ATP SYNTHASE 77 556 - -
Eupl11g01184 559 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 438 554 - -
Eupl11g01184 559 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 441 IPR027417 -
Eupl11g01184 559 CDD ATP-synt_F1_beta_N 87 160 - -
Eupl11g01184 559 FunFam ATP synthase subunit beta 160 437 - -
Eupl11g01184 559 Gene3D ATP synthase, F1 beta subunit 1 51 IPR042079 -
Eupl11g01184 559 Gene3D - 438 558 IPR024034 -
Eupl11g01184 559 MobiDBLite consensus disorder prediction 1 42 - -
Eupl11g01184 559 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 214 435 IPR000194 GO:0005524
Eupl11g01184 559 MobiDBLite consensus disorder prediction 55 80 - -
Eupl11g01184 559 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 86 159 IPR036121 GO:0046034|GO:1902600
Eupl11g01184 559 SMART AAA_5 226 498 IPR003593 GO:0016887
Eupl11g01184 559 FunFam ATP synthase subunit beta 1 51 - -
Eupl11g01184 559 NCBIfam F0F1 ATP synthase subunit beta 88 553 IPR005722 GO:0015986|GO:0045261|GO:0046933
Eupl11g01184 559 Gene3D - 77 159 - -
Eupl11g01184 559 CDD F1-ATPase_beta_CD 161 440 - -
Eupl11g01184 559 CDD ATP-synt_F1_beta_C 442 549 - -
Eupl11g01184 559 Pfam ATP synthase F1 beta subunit 1 47 IPR020971 GO:0000275|GO:0005524|GO:0006754|GO:0016887
Eupl11g01184 559 Hamap ATP synthase subunit beta [atpB]. 86 553 IPR005722 GO:0015986|GO:0045261|GO:0046933
Eupl11g01184 559 ProSitePatterns ATP synthase alpha and beta subunits signature. 426 435 IPR020003 GO:0005524
Eupl11g01184 559 PIRSF ATPase_subunit_beta 7 559 - -
Eupl11g01184 559 Gene3D - 160 437 IPR027417 -
Eupl11g01184 559 FunFam ATP synthase subunit beta 77 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl11g01184 Eupl-Chr11 16516527 16522699 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl11g01184 124 496 Primary Pumps ATPases(2) AT1G20260 28.180 1.18e-27 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl11g01184 K02133 - nnu:104594252 985.326