Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl11g01162 ATGGGAGATCATTTCGTGTTGCTTGTGGATCGGTTGCTCACTGAATCCACACTGGAAGCTGCAATCGAGAGCAGAAATCGGTCTCTGCAAGCTACTGCCTCGGCAGAAGCCACGAAAATTGACCTCTCTTCACATAAGATGGATTTTGGTAATGGGTCGACTCCAGGGAAAGTGGTGGAGTGCCGGATTTGCCAGGACGAGGACGAAGATTCCAACATGGAGACACCTTGCTCTTGTTGCGGCAGCTTGAAGTATGCTCACCGAAGATGCGTCCAGAGGTGGTGTAATGAGAAGGGTGATACCATTTGTGAAATATGCCACCAGCAATTCAAGCCAGGTTATACAGCACCTCCTCAGTTGTTTCATTATGGGGGTATTCCAATGAATTTCAGGGGCAACTGGGAGATTTCCAGAAGGGACCTTGATAACCCTCGATTTATCGCAATGGTTGCAACTGACCGCAATTTCCTGGATCCCGACTATGGCGAGTATTCAGCCCCCACTTCAAGAGGCCTTATGTGCTGCCGATCTGTCGCTATAATCTTCATGGTTCTCTTGGTCCTACGTCATACTCTACCAATCATAATTAGTGGATCTGAGCAGTACTCATTCGCATTGTTCATGTTGTTGCTCTTGAGAACTGCCGGGATTCTGCTGCCAATCTATGTCATGGTGAGAGCAGTGACTGCTATCCAACGTCGCCGCTTCCAACGGGAGCATCAAGACCTTCCCCATACTGCAACTGAAGAAGAAAACGAGCAGATGCATATGCAACCTCAGACACATCTAATTCACGTGCACTGA 804 0.4838 MGDHFVLLVDRLLTESTLEAAIESRNRSLQATASAEATKIDLSSHKMDFGNGSTPGKVVECRICQDEDEDSNMETPCSCCGSLKYAHRRCVQRWCNEKGDTICEICHQQFKPGYTAPPQLFHYGGIPMNFRGNWEISRRDLDNPRFIAMVATDRNFLDPDYGEYSAPTSRGLMCCRSVAIIFMVLLVLRHTLPIIISGSEQYSFALFMLLLLRTAGILLPIYVMVRAVTAIQRRRFQREHQDLPHTATEEENEQMHMQPQTHLIHVH* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl11g01162 267 Pfam RING-variant domain 61 106 IPR011016 GO:0008270
Eupl11g01162 267 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 50 116 IPR013083 -
Eupl11g01162 267 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 238 IPR033275 -
Eupl11g01162 267 Pfam Protein of unknown function (DUF3675) 112 228 IPR022143 -
Eupl11g01162 267 ProSiteProfiles Zinc finger RING-CH-type profile. 53 113 IPR011016 GO:0008270
Eupl11g01162 267 SUPERFAMILY RING/U-box 59 111 - -
Eupl11g01162 267 SMART ringv_2 60 107 IPR011016 GO:0008270
Eupl11g01162 267 FunFam Zinc finger family protein 50 116 - -
Eupl11g01162 267 CDD RING_CH-C4HC3_MARCH 61 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl11g01162 Eupl-Chr11 16179948 16182720 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl11g01162 60 107 C3H Transcription Factor Family AT2G37950 45.098 3.78e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl11g01162 - - ming:122078840 425.246