Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Eupl11g01107 | ATGCAGAGGCTACCAGACACAAACGCGGCTAAAATGCGTCCCTCCAGCACATCAGAAACAGCATTGGTGGCGGTGGGTAAGGAGAAGGAAGTTGAAGGAGAGGATCAAAGCCCCAACCCTCCCACAACCACCGTCTCCTCCGCTCAACAACAGAGGCAAATGGCACGATTGAAGGATGCTGTGCTCCAGATTGCCATCTCTAGAGGATCTTCTCTGTCAACGCAGAAATCAAAGCACATCGAAGATCATCTTCGTTCTCTATTTCCATCTGGACTGAGCACCCCAACTCATCCTCCTTATGCAGAGATGATAATAGCAGCGATACGAGAGTTGAAGAAGAAGGGAGGTTCGAACGAGGCGTCCATCTCAAGCTACATCGAATCAAACTATCAGGATCTGCCCTGGGCCCACTCACGTTATCTCTCCCACCATCTCGAGAAGCTCGTCGAAAGGGGTGAGATCATTACTGCTTTTCGGTCACGCTACGTCCTCCCAAACCCTAATCAGCAGCAGCGGCGGCGGCGGAAGCATCGTAGGGGAAGGCTTCCTAAGAAATGCGAGCCTGAACAACAAATAGTAGTGACAAGTGAGATGATCGAATCAAGGGCCGATGATGATGTTGTCGATGGCTCGATGGTCCTACCCAACAAGGATTTTACGGTCGATGCGATGGGGGTGGGGCCCGTGCAGCAGCATTGCAGGCCCGAACATATAGTAGTGCCAAGTGAGATGATGCGATCAAGGGCTGATGATGATGTTGACGATGGCTCGATGGTCCTACCCAACAAGCATTTTACGGTCGATGCAATGGAGGTGGGGCCCGTGCAGCAGCAGCAGCAGCGGAAGCTTAGAGGGAGGCCTCCTATGAAACGTGATCCTGATCAAAATGTTCAACTAGCGAGAACTGGCACAATGCGTTCATGGGCTGATGATGGCTCGATAGTCCCACCCAACAGGCCTACTGCGGCCGTGATGAAAGAGGGGGGTGGGCCCTCTCAGCAAGAGCAAAATCAGCCAAAGCGAAAAATTCGACCGGAATCACCTGCTCCGACGGCCGTGATGGAAGAAGTGAGGCCCCCACAGCAGCAACAAAAGCGCCGAGGGAGAGGGAGGCCTCCCAAACCCAAGCCTGATGGATTGAACACCTAG | 1149 | 0.5318 | MQRLPDTNAAKMRPSSTSETALVAVGKEKEVEGEDQSPNPPTTTVSSAQQQRQMARLKDAVLQIAISRGSSLSTQKSKHIEDHLRSLFPSGLSTPTHPPYAEMIIAAIRELKKKGGSNEASISSYIESNYQDLPWAHSRYLSHHLEKLVERGEIITAFRSRYVLPNPNQQQRRRRKHRRGRLPKKCEPEQQIVVTSEMIESRADDDVVDGSMVLPNKDFTVDAMGVGPVQQHCRPEHIVVPSEMMRSRADDDVDDGSMVLPNKHFTVDAMEVGPVQQQQQRKLRGRPPMKRDPDQNVQLARTGTMRSWADDGSIVPPNRPTAAVMKEGGGPSQQEQNQPKRKIRPESPAPTAVMEEVRPPQQQQKRRGRGRPPKPKPDGLNT* | 383 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Eupl11g01107 | 382 | Gene3D | - | 92 | 172 | IPR036388 | - | |
| Eupl11g01107 | 382 | MobiDBLite | consensus disorder prediction | 36 | 54 | - | - | |
| Eupl11g01107 | 382 | Pfam | linker histone H1 and H5 family | 97 | 155 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
| Eupl11g01107 | 382 | PANTHER | HISTONE H1 | 51 | 377 | - | - | |
| Eupl11g01107 | 382 | ProSiteProfiles | Linker histone H1/H5 globular (H15) domain profile. | 96 | 166 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
| Eupl11g01107 | 382 | MobiDBLite | consensus disorder prediction | 1 | 54 | - | - | |
| Eupl11g01107 | 382 | MobiDBLite | consensus disorder prediction | 272 | 382 | - | - | |
| Eupl11g01107 | 382 | SUPERFAMILY | "Winged helix" DNA-binding domain | 93 | 157 | IPR036390 | - | |
| Eupl11g01107 | 382 | CDD | H15 | 94 | 155 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
| Eupl11g01107 | 382 | MobiDBLite | consensus disorder prediction | 165 | 186 | - | - | |
| Eupl11g01107 | 382 | SMART | h15plus2 | 94 | 160 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
| Eupl11g01107 | 382 | FunFam | HMG-Y-related protein A | 93 | 175 | - | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Eupl11g01107 | 90 | 176 | Single Myb Histone (SMH) Gene Family | AT1G49950 | 34.043 | 2.41e-06 | 47.0 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Eupl11g01107 | - | - | nnu:104609944 | 141.354 |