Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl11g01040 ATGGCAAATTTGGACATGTCACTTGATGATCTGATAAAGAGCAGAAGTAACAGCGATAGAGGGAGAGGACGAGGGAGGGCCCGCCGTGGGCGAGGGCGAGGAGGCACTTTTAGTCGTGGAAGGGCATCAGGGATGCTCCGTAGAGGGCCTCTCAGAGTGAATGCTCGGCCATCGCCTTACACAATTGCCAAGTATTTTCATCAGTCTTCCAGCAGAACCAAGGATTTTACATGGCAGCATGATTTGTTTGAAGATAGCCTGGTAGCTGCAGGGTATTCTGGGATTGAAACTGGCACAAAATTATATGTTTCCAACTTGGACTATGGAGTGACCAACGAAGATATAAAGGAACTTTTTTCTGAGCTTGGAGACCTGAAGCGATATGCAGTTCATTATGACAGAAATGGTCGCCCAAGTGGTTCAGCTGAGGTTGTGTTTACTAGGAGAGTTGATGCATTAGCGGCTGTGAAGCGATATGATAATGTTCAACTAGATGGGAAGCGTATGAAGATCGAAATTATAGGCACCAATTTAGGGATGCCTGTTTCCGCTCGTGTGAATGTGATTGGAGCAGCAAATGGAAGAGGAAGGAGGACGGTTGTTATGACGCCGGAATTGGATCGTGCAGGTGGTTCTGCTTCTCTGAATCGTGGTTCAGGTAGGTGGAACCGTGGGGGTTTTCGGCGTGGCCGTGGACGTGCTCGCAGTCGGGGACGCGGCCGTGGGAGGAGGCAACCCATTGAGAAGTCTGTTGGTGAACTGGACAAGGAATTAGAGAACTATCATGCGGAAGCCATGCACACATCTTAA 810 0.4914 MANLDMSLDDLIKSRSNSDRGRGRGRARRGRGRGGTFSRGRASGMLRRGPLRVNARPSPYTIAKYFHQSSSRTKDFTWQHDLFEDSLVAAGYSGIETGTKLYVSNLDYGVTNEDIKELFSELGDLKRYAVHYDRNGRPSGSAEVVFTRRVDALAAVKRYDNVQLDGKRMKIEIIGTNLGMPVSARVNVIGAANGRGRRTVVMTPELDRAGGSASLNRGSGRWNRGGFRRGRGRARSRGRGRGRRQPIEKSVGELDKELENYHAEAMHTS* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl11g01040 269 Gene3D - 93 174 IPR012677 -
Eupl11g01040 269 SMART FoP_duplication_2 202 269 IPR025715 -
Eupl11g01040 269 MobiDBLite consensus disorder prediction 224 240 - -
Eupl11g01040 269 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 4 267 - -
Eupl11g01040 269 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 101 170 IPR000504 GO:0003723
Eupl11g01040 269 CDD RRM_THOC4 99 173 - -
Eupl11g01040 269 Pfam C-terminal duplication domain of Friend of PRMT1 213 263 IPR025715 -
Eupl11g01040 269 SMART rrm1_1 100 172 IPR000504 GO:0003723
Eupl11g01040 269 SUPERFAMILY RNA-binding domain, RBD 22 173 IPR035979 GO:0003676
Eupl11g01040 269 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 99 176 IPR000504 GO:0003723
Eupl11g01040 269 MobiDBLite consensus disorder prediction 210 248 - -
Eupl11g01040 269 MobiDBLite consensus disorder prediction 12 43 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl11g01040 Eupl-Chr11 13824678 13834247 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl11g01040 99 173 Eukaryotic Initiation Factors Gene Family AT4G34110 32.000 1.58e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl11g01040 K12881 - msin:131228015 349.362