Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl11g01018 ATGGCGGAAGTTGCAGACCTTCGTCTTCTCGAAGAAGAACTAGCAACCCTAGAATGCGCCCCCTACTTGTCCCACCACTACGCCCACGGAGAATTCTACTCGTCCGACCCCGATCCCTTCCCTCCCCGACTCTCCGAGCTCGTTCCTTTAGATCGCTCAGTTCACGCTCAGATCGTCGTCGACGAAGACGACGTCGACGAACGAGAAGCTCGCTTCGAGATTGATAGATCTGACGATTCAGATTCGGACTCTGTTACGGACTTGAATTACTTCACCCGCCAAAATCGTCAGGTAAACCTCTCTATGGATTTGTTCGACTTCGAACGTTGCCCTGAACCGACACATGTTCTTGATATTAGCGGTTCTGTGCAGAACCCATATTCTGATGAACCTGGTTTCAGGATTCTTGATGGAAACGAGGAAATTGGTTCGAATTATCTTGAGCTAGGGTTAGGGTTGGGTTTTGATAGGGTACATGGTGATGAGGATGATGACAATGATGGGTTTATGATTGCGGATTCCGGCGGTGACTTCTTTGTGAGCCGAAGGGAGGAACCCGCTGAGTCTTCTCCGCTTGAATTGTTTGGGGATGTCCTTCAAGTTGTCGGTATTGGATCCGATTCGGATGAGGAGGAGAGGAGAGTTGTGGAGATCGATTTGAATTCCGCGGTCGATGATGGATTCGATCAAGCCCCGGACGATCTGATTCTCCCGCTATGTTGGGATTGTCTCCGTTTGGAGGATCAGAGGGAATCCAATGAGGAGTTCGAGTGGGAGGAAGTTGACGTGAGGGTCGATGAGCTAGAGGTTCTGAGCATGGTGATTGATGGCGATGGGGACAGATCAGTTTCAACTGAAATTCAATCTGAAGAAGTGGGTGGATTAATGGAAGAAGCGATAGAAGCGATGAGAAATTTAGAATGGGAAGTTCTTTCGACAGTTAACAATTTGGAAAGGAACCTCGTATTAGAATCTTATATGGCCATTCAAGATGATGACATTTACACTGCAGAGTACGAGTTGCTTTTCGGGCAATTTGCGGAGAATGAAAGTTTTCCGAGGGGTAGTCCCCCGGCTGCCAAATCTGTTGTCGAGAATCTCCCATCGATCATCTTAACTCAACAACATGTGCAGAACAACAATGCACTTTGTGCAGTTTGTAAGGACGAGATATCCATGGAAGAACAGGCAAAGCAGCTCCCTTGCTCCCATTACTACCATGGGGACTGCATTTTGCCATGGCTGAACATTCGGAATACTTGTCCTGTTTGTAGGTATGAATTACCTACAGATGATCCTGAATATGAGCAGTGGAGGATCCAAAGGGCTGGCCATCACCTCTAG 1344 0.4784 MAEVADLRLLEEELATLECAPYLSHHYAHGEFYSSDPDPFPPRLSELVPLDRSVHAQIVVDEDDVDEREARFEIDRSDDSDSDSVTDLNYFTRQNRQVNLSMDLFDFERCPEPTHVLDISGSVQNPYSDEPGFRILDGNEEIGSNYLELGLGLGFDRVHGDEDDDNDGFMIADSGGDFFVSRREEPAESSPLELFGDVLQVVGIGSDSDEEERRVVEIDLNSAVDDGFDQAPDDLILPLCWDCLRLEDQRESNEEFEWEEVDVRVDELEVLSMVIDGDGDRSVSTEIQSEEVGGLMEEAIEAMRNLEWEVLSTVNNLERNLVLESYMAIQDDDIYTAEYELLFGQFAENESFPRGSPPAAKSVVENLPSIILTQQHVQNNNALCAVCKDEISMEEQAKQLPCSHYYHGDCILPWLNIRNTCPVCRYELPTDDPEYEQWRIQRAGHHL* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl11g01018 447 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 345 431 IPR013083 -
Eupl11g01018 447 FunFam E3 ubiquitin-protein ligase RING1-like 345 431 - -
Eupl11g01018 447 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 282 429 - -
Eupl11g01018 447 ProSiteProfiles Zinc finger RING-type profile. 384 425 IPR001841 -
Eupl11g01018 447 SMART ring_2 384 424 IPR001841 -
Eupl11g01018 447 Pfam Ring finger domain 384 425 IPR001841 -
Eupl11g01018 447 SUPERFAMILY RING/U-box 366 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl11g01018 Eupl-Chr11 13329212 13332145 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl11g01018 235 431 C3H Transcription Factor Family AT5G60820 44.651 5.95e-42 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl11g01018 - - nnu:104600329 473.781