Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl11g01012 ATGGATTTGAGTGACAAGGGTAAACTCGGACTGGAAAAGCGGGGTGAGGATCCTTTGAACTATCATTCATCTAATATGTCCTCAGACTGGCGATTTGGCGGTGCCAGTCTCACGAATCATCCAATGGGTTTGCTTCCTGCAGACAATTCTATCGCCGTTTGCAAAGGAGATCTGATGGGTTCTTCTGCCTGTTCCTCCGTTTCAATGGCGGACTCATTTTGCCCAACCCCTTGGGGCCACCCAAATTCACAAAATTTAGGCTTCTGTGACAGTAATGTCCAAACCAGTACAAGCGCCTCCAATGCAGTGGCAGTCAGCAAAGGGTTTCCCCTTTCTTCGCGAACATGCATCGATAAAGCATTCGATATGGGTTGGAATTCCTCGAATGAGATGTCAAAAGGGGGTGTTTTCTTACAAACTGGTGCCGGGATGCTCCCTCAGAGCTTATCTCAGCTCCCAGCTGATTCTGCCTTCATTGAGCGAGCCGCCAGGTTCTCATGTTTCAATGGTGGGAATTTTAGTGATATGGTGAACCCTTATAGCATTTCTGAATCTCTGAATCTTTATTCTAAGGGTGGAAGAGCACTTCAAGGGCCTTCAGAGGATCTGTTGGAGAATGGGTTGAAACCCGTATTGGGAATCCAATCTCAGAAGAATGAGCCAGCCATGGCTGAAGTTGCCAGAGATGTTTCAGTTTCTGTTGAGTGTGGGGCCACTGAAGGGAGTCCAATCAAGAATGGAAGAGAAACAGGGAGCTTCGTAAGGCCTCCTGATGAAGCAAACAAAGGAACTGGGGTATCTAGCAATGATTCTGATGAAGCTGAGTTTAGCGGCAGTGGTGGCCAAGATGAGCCATCTATGCTAGAGAATGCTGGCGGGGAACCTTCATCAGCTAAGGGACGGGGGGTGAAGAAAAGAAAAAGGAGTGGTCGGGATACTGAGCTTGACCAAGTTAAAAGAGCCCTACAACTTCATAGTGAAACTGCAAAGGATAACAGTGAAACTAAACAGAAGGGTGAACAAAGTCCAATTTCCACTGCTAAAGCTACTAAACATGGTAATGATAGTCCTCAAGCTTCTGATGCACACAAGGAAGATTATATTCATGTTAGAGCGCGAAGGGGACAGGCGACAAACAGCCACAGTCTTGCAGAGAGAGTAAGACGGGAAAAGATCAGTGAAAGGATGAAGCTTCTTCAAGACCTTGTTCCTGGTTGCAGCAAGGTCACAGGAAAGGCTGTCATGCTCGATGAGATCATTAACTATGTACAATCATTGCAACGACAGGTTGAGTTTTTGTCAATGAAGCTTGCAGCTGTCAATCCACGGCTTGACTTCAACATTGAAGGGTTCCTTGCGAAAGACATCCATCAGTCAAGAGGTGGTCCATCTACGATGGGGTTTTCACTAGATATGAGTATGGCTCATCCCCATATACATCCATCTCAACAGGGATTGATCCAAGCAGGAATTCCTGGCATGGGGAACCCCTCAGATGCACTTAGGAGAACCATTAATTCTCAACTGATGGCCATGAACGGAGGATACAGGGAACCAACTCCCCAGATACCCAATGTATGGGATGATGAACTCCACAATGTCATCCAGATGAACTTTGGCTCCAATGTCCCATTCAACAGTCAAGACTTAAATGGTTCTCTGCCACCTGGCCATATGAAAGTTGAGCTTTGA 1692 0.4651 MDLSDKGKLGLEKRGEDPLNYHSSNMSSDWRFGGASLTNHPMGLLPADNSIAVCKGDLMGSSACSSVSMADSFCPTPWGHPNSQNLGFCDSNVQTSTSASNAVAVSKGFPLSSRTCIDKAFDMGWNSSNEMSKGGVFLQTGAGMLPQSLSQLPADSAFIERAARFSCFNGGNFSDMVNPYSISESLNLYSKGGRALQGPSEDLLENGLKPVLGIQSQKNEPAMAEVARDVSVSVECGATEGSPIKNGRETGSFVRPPDEANKGTGVSSNDSDEAEFSGSGGQDEPSMLENAGGEPSSAKGRGVKKRKRSGRDTELDQVKRALQLHSETAKDNSETKQKGEQSPISTAKATKHGNDSPQASDAHKEDYIHVRARRGQATNSHSLAERVRREKISERMKLLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDFNIEGFLAKDIHQSRGGPSTMGFSLDMSMAHPHIHPSQQGLIQAGIPGMGNPSDALRRTINSQLMAMNGGYREPTPQIPNVWDDELHNVIQMNFGSNVPFNSQDLNGSLPPGHMKVEL* 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl11g01012 563 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 268 480 IPR024097 GO:0006355
Eupl11g01012 563 SMART finulus 382 432 IPR011598 GO:0046983
Eupl11g01012 563 Gene3D - 373 446 IPR036638 GO:0046983
Eupl11g01012 563 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 376 426 IPR011598 GO:0046983
Eupl11g01012 563 MobiDBLite consensus disorder prediction 338 356 - -
Eupl11g01012 563 MobiDBLite consensus disorder prediction 1 22 - -
Eupl11g01012 563 MobiDBLite consensus disorder prediction 262 276 - -
Eupl11g01012 563 MobiDBLite consensus disorder prediction 1 19 - -
Eupl11g01012 563 MobiDBLite consensus disorder prediction 307 337 - -
Eupl11g01012 563 FunFam Basic helix-loop-helix transcription factor 373 445 - -
Eupl11g01012 563 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 374 445 IPR036638 GO:0046983
Eupl11g01012 563 Pfam Helix-loop-helix DNA-binding domain 379 427 IPR011598 GO:0046983
Eupl11g01012 563 MobiDBLite consensus disorder prediction 238 362 - -
Eupl11g01012 563 CDD bHLH_AtBPE_like 366 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl11g01012 Eupl-Chr11 13202732 13207556 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl11g01012 1 541 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68920 45.173 7.36e-119 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Eupl11g01012 HLH 2.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl11g01012 - - nnu:104600291 767.303