Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl11g01007 ATGATCAATTCAGGAAGCAGCTCTGGTTGGACGTCGCTGGTTGAAGATAAAAGCCCGATCATAATTCTTGTTCAGTCCATCTTGGCATCTATTTCAGAGATCACGGCCTCAGTGGTGTGCATAGAGATAGAACAAGAAAACTTCATGGAAATTGGATGCTTTTTCTATCGTTCTTCTCCAGCCATAATGGAATTGCAGACGACCGAGAATACCCCGCCGAATGCAACAGAGATTCTACAATCTCTATCCAAAAGCATTGACCATGCCAAGCATCTTGTGGGGAAATGTTGTACTGGGGGCATTTCAATTCCAGACCCTGAAGTCAGAAGCATCATAGAACAGCTGGAGGGTGTGATAAGAAACATAGGAGAGGGCCTGAGCTTGATACCATCTTCGACATTCAATGACCAAGAATATGCAGAAATTGCAGTTCAATCCCTTTCGAGGGAGATGCAAAATGCTCAGTTTGAGATTAGTCAAATTCAAGTACCAGAGTCCAAAGAACCAAAAATACAGATTCTGCCTTCAGAAGAGTTACCAGAGGGAGAACCGGCGTCAGCAGAAACTGATCTTTACTCCATCAATGTTGAATTTTCCACTGAGATTCCTCGGTCATTAGATATGCCACAAATGATTGACTTCCTTAGAGGAAGGAGCTACATTGGACAAGGAAGCCATGGAAGCAGTAGTCCTAGATCATTGAAGACATTACCGCAGGTGGCTGAGTACATGGAGCCCCTGTATGAGACATTCTTCTGTCCATTAACTAAGAAGATCATGGATGACCCAGTCACCATAGCAAGTGGTGTGACCTATGAGAGAAGGGCCATAACCGAGTGGTTCAAGAACTCTGAAGATGGTTTGGAAAATGTCATCTGCCCAACCACCAGACAGAAACTGGCGAGTATAGTTTTGAACACCAATATAGCTTTAAAGACTACAATAGAAGAGTGGAAGGAGAGAAATGAAGCAACACGGATCAAGGTTGCTCGGGCTGCTTTGTCGTTAGCCAGCTCAGACAATATGATACTCGAAGCGCTAAAAGACTTGCAACTTATCTGCCAGAGGAAACAATATAACAAGGTACAGGTGCGCAACATTGGAATGGTACCATTACTTGCTCAGTTTCTGGAGTACAAAGACAGGAAGGTGAGATGTGCAACGCTGGAAATGTTGCGGTTACTGGCAGAGGATGATGAAGATGGCAAGGAGATGATTGGCAAGACAAAAGCCATTTTGACAACAATCAAGATGTTGTCAAGTAATCACCTTCAAGAAAGGCATACATCCTTGGAATTCTTGCTAGAGCTTTCAAGGTCTGAATTATTGTGTGAGAAGATTGGATCAGTTACTGGAGGGATTTTTATGCTAATCACTATTAAATATAAGCAGACCTTTGATGCTTCCGCTGCGGAGAAAGCAGATAAAATCCTTAATAACTTAGAGAAATCTCCGAAGAACATCAAGTGCATGGCAGAAAATGGGCTCTTGGAACCGCTTCTAAACCATCTTATCAAGGGTTCCGAGGAGATGCAGATGGAGATGGGGAGCTACCTCGCAGAAATTGTTCTTGGACATGACACTGAAACCTATGTGGCTGAGAGAGCTTCTCCCACTTTGATCAAAATGGTCCACAGCGGTAACAGTCTAACAAGGAAAGCAGCATTCAAAGCTCTTGTCCAAATCTCATCCTACCATCCAAACAGTAGAACACTTGTAGAAGCTGGCATCATACCAATCATGATCGGAGAGATGCTCACACGGAGAATCCACAATGAACCCATGAACTCTAAGGAAGAATCTGCTGCAATCCTGGCGAACATACTCGACTCTGGGATTGCTCTTGAGACACTCCAAGTAAACACCCATGGCCACACAATGACATCGGACTACATTGTCTACAACATCATCCTCATGCTCAAGAACTCAACCCCGGATGAACTCAACATCAATCTCATCAAAATCCTCCTCTGCCTAACAAAATTCCCCAAATCAGTAACCACTGTAGTCTCCGTGGTCAAAGAGACCGAAGCGAGCTACACCCTGATTGAACTCATCAATTCTCCAAAGGAGGAACTCGGGATCACATCAATTAAACTGCTCATCACTCTCATACCCTACATGGGCCACACCCTAGCAGACAGACTCTGCAAGACAAGAGGTCAACCTGAGAACCTAATCAAGAATCCAACCGAAACAAGCCGGATCACCGAAAAACACGCTGTTTCCGCAACCTTCCTAGCAAAACTCCCCCACCAAAACCTAACACTCAATCTGGCCCTCCTCCACAAAGACACAGTCCCCACAATCCTACAAACAATCAATGAAATCCAAAGAAGTGGAGCAAAAACAAGCAGGTTTGCAAATTCCTACTTGGAAGGTCTAGTGGGTATTCTTGTAAGATTCACAACTACTCTATATGAACCCCAAATACTTTTCCTAGCAAGAAATCACAACCTCACAGCAGTATTCACAGAGCTGCTCATGAGAATCACAAGTGATGAAGTACAGAGACTATCAGCAATTGGGTTGGAGAATCTTTCAGCAGAATCAATAAATCTATCAAAACCACCACAAATCAAGAAAACCAAGTTCCTGAAGTTGTTCTACTTACCAAGGTTTCTATCTTTTGGGTCATCAAGGGGGAGGAGATTACCAGTGTGCCCAGTTCACAGAGGGGCTTGTTCTTCACAATCCACCTTTTGCTTACTTGATGCAAAGGCTGTAGAGAGGTTGTTGGCATGTTTGGACCATGAGAATGTTGAGGTTGTTGAGGCTGCACTGTCAGCTATTTGTACCCTGTTGGATGACAAGGTTGATGTGGACAAGAGTGTGAATATGTTGAGTGGGGTGAATACCATACAACACGTGTTGAATGTGTTGAGGGAGCACAGACAAGAGAAAGTGTGGCAGAAATCTTTTTGGTTGATTGAGAGATTCTTGATGAAAGGTGGGGACAGATCTGCTTCTGATATATCACAGGACAGGTTGTTGCCTTCTACATTGGATGAATTTGCTGTCTTCCTCCAGTTTGGCGTACTTCTCTACTCGGATGCCAAGCTCAGACATAGTAGACAGTGGGTTTTCACCAAGGCCTCCTACAATCTTGATCCAAAGAGGAAGTGGTTATTGAAGGCCACCATCATTGTAGCCTCGTTGGCCCCTGAGATGGTCGAACTCAAGGTACAGTTCATCAAAGCTAGAAATAGAGCCGCTGGGCAGCTTATAGAACCAGATCAACAAACTCCCATGGAGGCTACTGGGGAACATTCGACACAAAATCACATCGTCATGAGCCCACAGCGCCATAGTTTGCCTGTTGTAAAAATCTGGGTTGAAAAACCTGAAAAAGTGACTAATGGGGTCACTTTGGGCAACCTGGCCTAA 3387 0.4423 MINSGSSSGWTSLVEDKSPIIILVQSILASISEITASVVCIEIEQENFMEIGCFFYRSSPAIMELQTTENTPPNATEILQSLSKSIDHAKHLVGKCCTGGISIPDPEVRSIIEQLEGVIRNIGEGLSLIPSSTFNDQEYAEIAVQSLSREMQNAQFEISQIQVPESKEPKIQILPSEELPEGEPASAETDLYSINVEFSTEIPRSLDMPQMIDFLRGRSYIGQGSHGSSSPRSLKTLPQVAEYMEPLYETFFCPLTKKIMDDPVTIASGVTYERRAITEWFKNSEDGLENVICPTTRQKLASIVLNTNIALKTTIEEWKERNEATRIKVARAALSLASSDNMILEALKDLQLICQRKQYNKVQVRNIGMVPLLAQFLEYKDRKVRCATLEMLRLLAEDDEDGKEMIGKTKAILTTIKMLSSNHLQERHTSLEFLLELSRSELLCEKIGSVTGGIFMLITIKYKQTFDASAAEKADKILNNLEKSPKNIKCMAENGLLEPLLNHLIKGSEEMQMEMGSYLAEIVLGHDTETYVAERASPTLIKMVHSGNSLTRKAAFKALVQISSYHPNSRTLVEAGIIPIMIGEMLTRRIHNEPMNSKEESAAILANILDSGIALETLQVNTHGHTMTSDYIVYNIILMLKNSTPDELNINLIKILLCLTKFPKSVTTVVSVVKETEASYTLIELINSPKEELGITSIKLLITLIPYMGHTLADRLCKTRGQPENLIKNPTETSRITEKHAVSATFLAKLPHQNLTLNLALLHKDTVPTILQTINEIQRSGAKTSRFANSYLEGLVGILVRFTTTLYEPQILFLARNHNLTAVFTELLMRITSDEVQRLSAIGLENLSAESINLSKPPQIKKTKFLKLFYLPRFLSFGSSRGRRLPVCPVHRGACSSQSTFCLLDAKAVERLLACLDHENVEVVEAALSAICTLLDDKVDVDKSVNMLSGVNTIQHVLNVLREHRQEKVWQKSFWLIERFLMKGGDRSASDISQDRLLPSTLDEFAVFLQFGVLLYSDAKLRHSRQWVFTKASYNLDPKRKWLLKATIIVASLAPEMVELKVQFIKARNRAAGQLIEPDQQTPMEATGEHSTQNHIVMSPQRHSLPVVKIWVEKPEKVTNGVTLGNLA* 1129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl11g01007 1128 Gene3D - 306 527 IPR011989 -
Eupl11g01007 1128 Pfam Armadillo/beta-catenin-like repeat 901 934 IPR000225 GO:0005515
Eupl11g01007 1128 Pfam U-box domain 249 323 IPR003613 GO:0004842|GO:0016567
Eupl11g01007 1128 ProSiteProfiles U-box domain profile. 246 325 IPR003613 GO:0004842|GO:0016567
Eupl11g01007 1128 SMART arm_5 357 397 IPR000225 GO:0005515
Eupl11g01007 1128 SMART arm_5 565 610 IPR000225 GO:0005515
Eupl11g01007 1128 SMART arm_5 896 936 IPR000225 GO:0005515
Eupl11g01007 1128 SMART arm_5 808 849 IPR000225 GO:0005515
Eupl11g01007 1128 SMART arm_5 484 524 IPR000225 GO:0005515
Eupl11g01007 1128 CDD RING-Ubox_PUB 248 305 IPR045210 -
Eupl11g01007 1128 Gene3D - 800 1060 IPR011989 -
Eupl11g01007 1128 SMART Ubox_2 250 318 IPR003613 GO:0004842|GO:0016567
Eupl11g01007 1128 Gene3D - 528 705 IPR011989 -
Eupl11g01007 1128 SUPERFAMILY ARM repeat 333 982 IPR016024 -
Eupl11g01007 1128 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 243 305 IPR013083 -
Eupl11g01007 1128 SUPERFAMILY RING/U-box 236 328 - -
Eupl11g01007 1128 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 23 1002 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl11g01007 Eupl-Chr11 13052265 13059026 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl11g01007 63 998 U-box Gene Family AT1G68940 51.494 0.0 1007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl11g01007 - - tss:122652435 1315.06