Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl11g00971 ATGGGTGCCGTTTGTTGCTGTATGCATGTCCAAGATTTTGAAGAATATGTAAATCCTAACAGTTCTGTTTACAGAAACTGTGTCTGTCTCAGATGCTTCATTCAAAACTTCGTAAATGCGTACACATCATTATTCCGAAGAGGGGAAGTGCACGCCCTCCCTTCATCCATTCAGGGGGCGGCATCTTTGACTTCTACTGCGTCACATGATAATTCTCTAGATGACATGTACCGCTCTCCTCCAAGGCCTTTGCCTTATGATGCCGATCCCAGATGTTTCCGTTTACAACGGGATGGCCTGAGCTCAAGACGTGAGAAGGGCTCAAGTCATTCGCATGAGGAATCTGAACCACTTAGAAGAAGTGATATTGACGCAGATCTAGAATCTTCAAGTGTGGGAGACAAATGGAATGTGTCTGAGGACGGAGGATCAAAGAAATGCCTATCCGAGTCCTCAGTGAAGCACTCATTGGCAAAGGTGTCAACTGGAGTTGGGTATATCTATTCATCATCGGAAGATGAAGATGTTTGCCCGACATGTCTCGAAGAATATACTCCGGAAAACCCCAAAATTATGACACAATGCTCTCACCATTTCCACCTTGGTTGTATATACGAGTGGATGGAGAGAAGCGAAAGCTGTCCAGTCTGTGGCAAGGATTTAGTGCCACTCGGGCACTTACAGCACAACTGA 693 0.456 MGAVCCCMHVQDFEEYVNPNSSVYRNCVCLRCFIQNFVNAYTSLFRRGEVHALPSSIQGAASLTSTASHDNSLDDMYRSPPRPLPYDADPRCFRLQRDGLSSRREKGSSHSHEESEPLRRSDIDADLESSSVGDKWNVSEDGGSKKCLSESSVKHSLAKVSTGVGYIYSSSEDEDVCPTCLEEYTPENPKIMTQCSHHFHLGCIYEWMERSESCPVCGKDLVPLGHLQHN* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl11g00971 230 CDD RING-H2_AIRP1-like 173 221 - -
Eupl11g00971 230 SMART ring_2 177 217 IPR001841 -
Eupl11g00971 230 SUPERFAMILY RING/U-box 172 224 - -
Eupl11g00971 230 ProSiteProfiles Zinc finger RING-type profile. 177 217 IPR001841 -
Eupl11g00971 230 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 152 224 IPR013083 -
Eupl11g00971 230 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 60 220 - -
Eupl11g00971 230 MobiDBLite consensus disorder prediction 64 147 - -
Eupl11g00971 230 MobiDBLite consensus disorder prediction 91 129 - -
Eupl11g00971 230 Pfam RING-H2 zinc finger domain 174 217 IPR024766 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl11g00971 Eupl-Chr11 12541924 12550590 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl11g00971 1 219 C3H Transcription Factor Family AT5G15790 59.111 5.85e-86 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl11g00971 - - ming:122079627 370.933