Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl11g00970 ATGGGGAGAGGTAGGGTACAGTTGAAGAGGATCGAGAACAAGATCAGTCGGCAAGTGACGTTCTCGAAGCGGAGGTCAGGGTTGCTGAAGAAAGCCCATGAGATCTCAGTTCTTTGCGAAGCTGATGTCGCCGTGATTGTCTTCTCCACTAAAGGAAAGCTCTTTGAGTACTCCACTAACTCCGGCATGGAAGGGATCCTGGAACGATATGAAAGATATTATTATGCCGAGCAAGAGGTTGTTGCGACTGATCCTGAATCACTGGGAAACTGGTCTATGGAATATGCCAAACTTAAGGCTAAGGTTGATGTTTTACAAAGAACCCAAAGGCATTTTATGGGAGAAGACCTTGACTCCTTGAGTCTCAAAGAGCTCCAACATTTGGAACAACAGCTTGATACTGCAATGAAGCAGATAAGATCAAGAAAGAACCAACTCATGTATGAATCCGTTGTCGAACTCCAGAGAAAGGATAAGGTTTTGCAGGAGCAGAATAGCATGTTAGAGAAGAAGATCAAGGAGATGGAGAAATCAATAGCTCAGCAGAGGCATTGGGAGCAGCAAAACCAAGGCCAAAACTCACCATCCTTCTTGCTATCACAGACACTTCCCTCCCTAACCATTGGTGGTACCTATCAAGCAAGATGCACCGGAGGTGAAGAGGAAGAAGCTCGAACTCAATCTCGATTCAACACGCACATGCCACCTTGGATGCTTCGACATCTGAATCCGTAG 735 0.4585 MGRGRVQLKRIENKISRQVTFSKRRSGLLKKAHEISVLCEADVAVIVFSTKGKLFEYSTNSGMEGILERYERYYYAEQEVVATDPESLGNWSMEYAKLKAKVDVLQRTQRHFMGEDLDSLSLKELQHLEQQLDTAMKQIRSRKNQLMYESVVELQRKDKVLQEQNSMLEKKIKEMEKSIAQQRHWEQQNQGQNSPSFLLSQTLPSLTIGGTYQARCTGGEEEEARTQSRFNTHMPPWMLRHLNP* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl11g00970 244 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Eupl11g00970 244 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Eupl11g00970 244 Coils Coil 122 145 - -
Eupl11g00970 244 CDD MADS_MEF2_like 2 73 IPR033896 GO:0000977|GO:0045944
Eupl11g00970 244 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Eupl11g00970 244 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Eupl11g00970 244 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Eupl11g00970 244 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Eupl11g00970 244 Coils Coil 151 178 - -
Eupl11g00970 244 Pfam K-box region 89 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Eupl11g00970 244 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 182 - -
Eupl11g00970 244 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Eupl11g00970 244 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
Eupl11g00970 244 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Eupl11g00970 244 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Eupl11g00970 244 FunFam MADS-box transcription factor MADS-MC 13 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl11g00970 Eupl-Chr11 12511473 12529916 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl11g00970 1 213 MADS-box Gene Family AT1G26310 59.471 4.12e-87 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Eupl11g00970 K-box 1.6e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl11g00970 K09264 - nnu:104599808 361.688