Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl11g00965 ATGGATTTCGTTCCTCCCTCCGACCATGTTTGCTACGTTCGCTGCAACTTCTGCAACACTGTTTTAGCGGTTGGAGTTCCATGCAAACGATCATTGGATACTGTGACTGTCAAATGTGGTCATTGTAGTAATCTTTCTTTTCTTAGCATTAGGCCTCCACTCCAAGGCCAGTGTCTAGATCATCAGCTGATGAGTGGTTTTCAGGGTTTCTGCAATGATCATAGAAAGGGCCAATCCTCATCGTCATCGTTACCAATGTCGAGCCAGCCGACGAGCCCCAAAGCACATTATGTTGTTAAACCACCTGAGAGGAAACACAGACTTCCGTCTGCTTACAATCGATTTATGAAGGAGGAGATACAACGGATTAAAGCGGCCAATCCGGAGATGCCGCATCGAGAAGCTTTTAGCACGGCAGCAAAAAATTGGGCTAGGTACATTCCACATTCGCCGCCTGGATCCGTTTTTGAGAATAACAACACTGAACGAAGCAATGCTTATGCAATGGAAGGCGTTGCCGATGTCAAACAATTGGAGTCACTTGGGCACAAAAATTAG 558 0.4606 MDFVPPSDHVCYVRCNFCNTVLAVGVPCKRSLDTVTVKCGHCSNLSFLSIRPPLQGQCLDHQLMSGFQGFCNDHRKGQSSSSSLPMSSQPTSPKAHYVVKPPERKHRLPSAYNRFMKEEIQRIKAANPEMPHREAFSTAAKNWARYIPHSPPGSVFENNNTERSNAYAMEGVADVKQLESLGHKN* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl11g00965 185 CDD HMG-box_SF 107 143 - -
Eupl11g00965 185 PANTHER PROTEIN YABBY 6-RELATED 6 162 IPR006780 GO:0007275
Eupl11g00965 185 MobiDBLite consensus disorder prediction 75 96 - -
Eupl11g00965 185 Pfam YABBY protein 6 146 IPR006780 GO:0007275
Eupl11g00965 185 MobiDBLite consensus disorder prediction 75 94 - -
Eupl11g00965 185 Gene3D High mobility group box domain 98 149 IPR036910 -
Eupl11g00965 185 SUPERFAMILY HMG-box 88 144 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl11g00965 Eupl-Chr11 12326792 12328959 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl11g00965 5 151 C2C2-YABBY Transcription Factor Family AT1G69180 64.189 3.41e-60 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Eupl11g00965 YABBY 2.8e-51 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl11g00965 K25796 - vvi:100261225 275.018