Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl11g00956 ATGGCTCATCCCGTCCAGAAGAACACTCTCTATGTAGGGGGTCTAGCAGAGGAGGTGAACGAAACTATACTACATGCGACGTTCATACCGTTCGGAGACATCAAAGACGTGAAGACGCCATTAGATCAGGCAACGCAGAAGCACAGATCGTTCGGGTTCGTTACGTTCCTCGAGAAGGAGGATGCTGCAGCTGCGATGGACAACATGGACAACGCTGAGCTCTACGGAAGAGTCCTGACCGTCAATTACGCCTTGCCGGAGAAAATCAAGGGTGGAGAACAGGGTTGGGCTGCACAACCCATTTGGGCAGATGCCGATACATGGTTTGAACGGCAACAGCAAGAAGAGGAAATGCAGCGTTTACAAGCAGAAAACCGCGCTACAATGGAAGCCGCAGAGGAGTTGCATAGAAAGAAACTGGCTCAGGAGCGAGAAGGGGAAAAAGACGAAGAAACTGAGACCAAAGACGATCCTATGGCAAGGGCAGAAGCAGAGGTTTTGAAACAGAACAATAGTTCTTAG 522 0.5019 MAHPVQKNTLYVGGLAEEVNETILHATFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAAAAMDNMDNAELYGRVLTVNYALPEKIKGGEQGWAAQPIWADADTWFERQQQEEEMQRLQAENRATMEAAEELHRKKLAQEREGEKDEETETKDDPMARAEAEVLKQNNSS* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl11g00956 173 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 10 79 IPR000504 GO:0003723
Eupl11g00956 173 Gene3D - 1 152 IPR012677 -
Eupl11g00956 173 FunFam Peptidyl-prolyl cis-trans isomerase 1 153 - -
Eupl11g00956 173 SUPERFAMILY RNA-binding domain, RBD 5 95 IPR035979 GO:0003676
Eupl11g00956 173 MobiDBLite consensus disorder prediction 117 173 - -
Eupl11g00956 173 MobiDBLite consensus disorder prediction 117 163 - -
Eupl11g00956 173 CDD RRM_PPIE 10 84 IPR034168 GO:0003723
Eupl11g00956 173 SMART rrm1_1 9 82 IPR000504 GO:0003723
Eupl11g00956 173 Coils Coil 111 138 - -
Eupl11g00956 173 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Eupl11g00956 173 PANTHER ATPASE E1 3 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl11g00956 Eupl-Chr11 12221694 12223640 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl11g00956 8 86 Eukaryotic Initiation Factors Gene Family AT3G11400 35.443 6.15e-10 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl11g00956 - - csin:114299037 308.531