Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl11g00898 ATGGCTAGCTATGGGTACCTGGTTGGACTAATGGCCATGGTTTTGATTTCTGTAATTGGGGACGTAAACAGCCAAGGCACTTGGGATACTAGTGCCCATGCAACATTTTACGGCGACATGCAGGGAAACGAAACCATGTACGGAGCTTGTGGATATGGAGATCTGTTTCAACAAGGATACGGACTGGAGACAGCAGCATTGAGCACAGCACTGTTCAACAATGGCAGCACTTGTGGTGCCTGCTTCGAGATCCAATGCATCAACGATCCGGAATGGTGCTTGCCTGGAACAATTAAAGTGACTGCAACCAACTTCTGCCCGCCTAACTACACCAAGACACATGATATTTGGTGCAACCCTCCGCAGAAGCATTTTGACCTATCTATGCCCATGTTTCTGAAGATCTCCAAACAAATAATGGCAGGCGTTGTCCCCGTCCAATTCCGACGAGTCCAATGTGTGAAGACTGGAGGAATGAAGTTCGAGATCAGCGGAAACCCTTACTGGTTACTCACGCTAGTGTACAATGTTGGAGGTGCCGGGGATGTTACAGATGTTAAAATTAAGGGGTCGAACACTGGTTGGATACAAATGACGCGAAACTGGGGCCAAAAATGGCAGACTTCGGCCCAGTTAGCTGGGCAAGCTTTGTCGTTCCAAGTGACTGCTAGTGACGGAAAGATGGTGGAGTCTGATAATGTTGCACCTGCTAATTGGCAATTTGGCCAGTCCTTTGAGGGGAGACAGTTTTAA 753 0.4807 MASYGYLVGLMAMVLISVIGDVNSQGTWDTSAHATFYGDMQGNETMYGACGYGDLFQQGYGLETAALSTALFNNGSTCGACFEIQCINDPEWCLPGTIKVTATNFCPPNYTKTHDIWCNPPQKHFDLSMPMFLKISKQIMAGVVPVQFRRVQCVKTGGMKFEISGNPYWLLTLVYNVGGAGDVTDVKIKGSNTGWIQMTRNWGQKWQTSAQLAGQALSFQVTASDGKMVESDNVAPANWQFGQSFEGRQF* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl11g00898 250 SUPERFAMILY PHL pollen allergen 155 247 IPR036749 -
Eupl11g00898 250 Pfam Expansin C-terminal domain 160 236 IPR007117 -
Eupl11g00898 250 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 168 247 IPR007117 -
Eupl11g00898 250 CDD DPBB_EXPA_N 30 153 - -
Eupl11g00898 250 Gene3D - 158 250 IPR036749 -
Eupl11g00898 250 PRINTS Expansin signature 157 169 IPR002963 GO:0009664
Eupl11g00898 250 PRINTS Expansin signature 86 97 IPR002963 GO:0009664
Eupl11g00898 250 PRINTS Expansin signature 115 132 IPR002963 GO:0009664
Eupl11g00898 250 PRINTS Expansin signature 233 249 IPR002963 GO:0009664
Eupl11g00898 250 PRINTS Expansin signature 59 73 IPR002963 GO:0009664
Eupl11g00898 250 PRINTS Expansin signature 98 108 IPR002963 GO:0009664
Eupl11g00898 250 PRINTS Expansin signature 169 190 IPR002963 GO:0009664
Eupl11g00898 250 PRINTS Expansin signature 204 225 IPR002963 GO:0009664
Eupl11g00898 250 SUPERFAMILY Barwin-like endoglucanases 28 176 IPR036908 -
Eupl11g00898 250 PANTHER EXPANSIN-A15 14 250 IPR002963 GO:0009664
Eupl11g00898 250 SMART dpbb_1 64 148 IPR007112 -
Eupl11g00898 250 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 158 IPR007112 -
Eupl11g00898 250 Pfam Lytic transglycolase 64 148 IPR009009 -
Eupl11g00898 250 PRINTS Expansin/Lol pI family signature 141 157 IPR007118 GO:0005576
Eupl11g00898 250 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576
Eupl11g00898 250 PRINTS Expansin/Lol pI family signature 233 247 IPR007118 GO:0005576
Eupl11g00898 250 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576
Eupl11g00898 250 PRINTS Expansin/Lol pI family signature 28 43 IPR007118 GO:0005576
Eupl11g00898 250 PRINTS Expansin/Lol pI family signature 195 209 IPR007118 GO:0005576
Eupl11g00898 250 Gene3D - 15 153 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl11g00898 Eupl-Chr11 11467751 11468629 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl11g00898 3 248 Expansin Gene Family AT5G39280 61.446 4.88e-116 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl11g00898 - - nnu:104603095 374.4