Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl11g00887 ATGGAAGGAGATCAAGAACAGAAGCATGCATGTAAGTTCTGCAAGAAGAGTTTCCCCTGTGGGAGGTCCTTGGGAGGACACATGAGGTCCCATATGACCAATACTTCAGCTACAGAGAAGCTTAATAAGAGGAAGGTCTCTTCTTCTGTTAATGGTGGAAGCAACAGTAGCAACACCTACATGGTGGCTTTTGAAGATGGTGGTCATGCTGGTTATGGACTTAGAGAGAACCCCAAGAAGACTTGGAGGCTTTCAGATTCAAACGACGATACTTTACGGCAGGGGAAGATCTGTAAAGAATGTGGTAAAGGGTTTCTGTCATGGAAAGCTCTCTTTGGTCATATGAGATGCCACTCTGAGAGAGAGAGAGCCTCCTTCAGCGTGGAGGATGATTCATGGACTGCTGAGAACCAGAAGCTTGTAATGGACAGCCAATCGGACAACGAGGCTGCAGCACCGAGGCGAAGGAGATCGAGAAGAACGAGGTACAAGACTACTAATACTGCTTCTTCTTCTTTCTCTTTTGCAAATGCTTCTTCTTCTGTTTCCGAGATTGAACAAGAACAAGAAGAAGTAGCTATGTGTTTGATGATGTTATCTAGGGATGTGGGGTACTGGGGTGGGTTGAATTCCCTTGCAGAGTCTTCAGATAATAATTCTGTGGTGGTTGAAGTTAGATCATTGGGTAAAGCTAAGCGAACTGCTGAAAAAGAAAGTAAAATTGTTATGTGCAATGGGGATGAGACTGTGAAGATGAAGAAACCCAGAGGTAAGAAGTTGGAATCTGGTATTTCAGACTCAGAAAATGTTCGATATGAGAGAAAAAAATCTGAAAATGTTCGCTTTGATTCTGGATTTTTGAGGAATGGTGTCAAGAAGGTCGAATCAGGAGTTTCTATTAATGGTTTTATTGGGGATGATGAGCTTAAGAAGCCTAACTTGGATGATGAATTAGAGGTGTCTGATGCTGAATTGGGGAAGGATTCTTATGATAAAATCAGAGTCAAGTGTACTAGAGCTGAAATGGGGAAGGATTTGATCAATGAAGCTGATTTGGAGTTTGGGAAGTATAAAATAAGCAAGGGAACCAGATATGATTCTTACAATCCTGAATTGGGGGGAGATTCCAGCAAGAAGGCAAGATACGATGCTTCTGATTCTGAAATTCGCAATGAGTCTCCACAGAAAAGCAAATTCGAGTGCACGACCTGCAACAAGATCTTTCACTCTTACCAGGCTCTTGGAGGTCACAGGGCGAGTCACAAGAAGATCAAAGGATGCTTTGCTTCGAGGATTGAGAGCAGCGAGAACAGCATTGAGACTGATTTTTCTCCTGATCCTACAGCTGACAGTAAGCTCATCAAGTCTTGCAGTAACGAGAACCCAATCGATCTGGCAGGGCCTGGTAGCGTTGAAACTCATTACAAGTTGAAGAAGAGTGAGCACAAGTGCCCAATTTGCTTCAAGGTTTTCACATCAGGCCAAGCTTTGGGTGGCCACAAAAGGTCCCATTTGGTTGGGAGCTCTGAAGCCAGAGGCAGTCAGACCATTGTAATTCAGCAACAGCTCCCTGAGATTCGCGATCTACTCGATCTTAATCTCCCTGCTCCCAGTGATGAAGGCACCAGTGGCCACGTTGCTTTTAAGCCATGGTGGGTCGGAAGCGACCACAAGCATGAACCGTTGGTGGGTCTGATCTCTAACTGA 1707 0.4452 MEGDQEQKHACKFCKKSFPCGRSLGGHMRSHMTNTSATEKLNKRKVSSSVNGGSNSSNTYMVAFEDGGHAGYGLRENPKKTWRLSDSNDDTLRQGKICKECGKGFLSWKALFGHMRCHSERERASFSVEDDSWTAENQKLVMDSQSDNEAAAPRRRRSRRTRYKTTNTASSSFSFANASSSVSEIEQEQEEVAMCLMMLSRDVGYWGGLNSLAESSDNNSVVVEVRSLGKAKRTAEKESKIVMCNGDETVKMKKPRGKKLESGISDSENVRYERKKSENVRFDSGFLRNGVKKVESGVSINGFIGDDELKKPNLDDELEVSDAELGKDSYDKIRVKCTRAEMGKDLINEADLEFGKYKISKGTRYDSYNPELGGDSSKKARYDASDSEIRNESPQKSKFECTTCNKIFHSYQALGGHRASHKKIKGCFASRIESSENSIETDFSPDPTADSKLIKSCSNENPIDLAGPGSVETHYKLKKSEHKCPICFKVFTSGQALGGHKRSHLVGSSEARGSQTIVIQQQLPEIRDLLDLNLPAPSDEGTSGHVAFKPWWVGSDHKHEPLVGLISN* 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl11g00887 568 Gene3D Classic Zinc Finger 396 504 - -
Eupl11g00887 568 ProSitePatterns Zinc finger C2H2 type domain signature. 98 118 IPR013087 -
Eupl11g00887 568 ProSitePatterns Zinc finger C2H2 type domain signature. 11 31 IPR013087 -
Eupl11g00887 568 ProSiteProfiles Zinc finger C2H2 type domain profile. 482 504 IPR013087 -
Eupl11g00887 568 MobiDBLite consensus disorder prediction 28 53 - -
Eupl11g00887 568 MobiDBLite consensus disorder prediction 142 166 - -
Eupl11g00887 568 Pfam C2H2-type zinc finger 97 119 - -
Eupl11g00887 568 Pfam C2H2-type zinc finger 399 423 - -
Eupl11g00887 568 Pfam C2H2-type zinc finger 9 32 - -
Eupl11g00887 568 Pfam C2H2-type zinc finger 482 504 - -
Eupl11g00887 568 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 552 - -
Eupl11g00887 568 MobiDBLite consensus disorder prediction 25 53 - -
Eupl11g00887 568 ProSiteProfiles Zinc finger C2H2 type domain profile. 399 426 IPR013087 -
Eupl11g00887 568 SUPERFAMILY beta-beta-alpha zinc fingers 399 504 IPR036236 -
Eupl11g00887 568 Gene3D Classic Zinc Finger 2 121 - -
Eupl11g00887 568 ProSiteProfiles Zinc finger C2H2 type domain profile. 9 36 IPR013087 -
Eupl11g00887 568 ProSitePatterns Zinc finger C2H2 type domain signature. 484 504 IPR013087 -
Eupl11g00887 568 SUPERFAMILY beta-beta-alpha zinc fingers 9 118 IPR036236 -
Eupl11g00887 568 ProSitePatterns Zinc finger C2H2 type domain signature. 401 421 IPR013087 -
Eupl11g00887 568 MobiDBLite consensus disorder prediction 368 391 - -
Eupl11g00887 568 ProSiteProfiles Zinc finger C2H2 type domain profile. 96 123 IPR013087 -
Eupl11g00887 568 SMART c2h2final6 399 421 IPR013087 -
Eupl11g00887 568 SMART c2h2final6 482 504 IPR013087 -
Eupl11g00887 568 SMART c2h2final6 96 118 IPR013087 -
Eupl11g00887 568 SMART c2h2final6 9 31 IPR013087 -
Eupl11g00887 568 MobiDBLite consensus disorder prediction 376 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl11g00887 Eupl-Chr11 11359761 11361612 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl11g00887 422 540 C2H2 Transcription Factor Family AT1G26610 46.281 1.56e-20 92.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Eupl11g00887 zf-C2H2_6 6.5e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl11g00887 - - nnu:104597985 753.051