Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl11g00886 ATGGATTACAGCAGATGGTCTGAAATGCAACAGCTCCCACCAAACCCTAACCCTTCAACTGATCCATACGCCCAATTCTACAATGCACAGCCATCTTCCTACGCTCGTTATCCTTACTACCCCACTCACCAATCCCAAAACCCTAACCTTTCCACCAACCCCCAAACTGCTCCAAGATATCATGAAATCCCTCCCGCCCAATTCGAAGCTGGTCCCGACGCCGTGCTTCGGCCTCCCGGTATCGACACGTATGCGGCCATGAACTCCTACCACCCTTCTCATTTGGGTTTCGAAGCCCAGGCCGCCGTGGCGTACGCTCACCAGCATACACAGATTGGTGGGTTGGCAGCGGCGACGTATTATCAGGACCCGAACGTCGTCACGCAGACTTGGGCGGCAAAGGAGGTGATTCGGCAATATGGAGCTGATCCTGTTGGTTATGCTGCTGCTGGCATAAGACCTCCAAAGGGGACAGAGCCATTGGTCCCTGCTAATCCAAATCCCATATTCTGGACCAACCCTGTGTTTCGACCTCCCATCAATGGTGCCATGAGAAGGGGCCCAAAGAAAACTAAGATTGTACAATCTGCGTGGTGTGAGGTCTGCAAGATTGATTGTAATAGTAGGGATGTCCTTGACCAACACAAATTGGGAAAGAAACACAAGAAGAACCTAGAGAAACTAGAAGAATCAAAGAAAAACGCCCTTGCCCCTACACCGGTGGCAAAGACTATAGTAATTGGCCCACAGGAGAACCCATCAGGCGACAATGGCAGAACTGTTGGTGTCCAGCAATCGAGGAAGAAAGCAGCCCCCTCATTGGCCCCTGGAGAGGACCTGGAGACAAAGAGACGGAAGCTCATGGAAGGTGGAGCAGCAGAAGATGCTGTGAGGGTCTGCGCGATATGCAACGTTGTATGCAATAGCGAGACAGTCTTAAATTTTCATCTTGCGGGACAAAAGCATGCAGCCATGGTGAAGAAACAAGAAGCCGGAACAGCTGATCCTGGCACTTGA 1017 0.5133 MDYSRWSEMQQLPPNPNPSTDPYAQFYNAQPSSYARYPYYPTHQSQNPNLSTNPQTAPRYHEIPPAQFEAGPDAVLRPPGIDTYAAMNSYHPSHLGFEAQAAVAYAHQHTQIGGLAAATYYQDPNVVTQTWAAKEVIRQYGADPVGYAAAGIRPPKGTEPLVPANPNPIFWTNPVFRPPINGAMRRGPKKTKIVQSAWCEVCKIDCNSRDVLDQHKLGKKHKKNLEKLEESKKNALAPTPVAKTIVIGPQENPSGDNGRTVGVQQSRKKAAPSLAPGEDLETKRRKLMEGGAAEDAVRVCAICNVVCNSETVLNFHLAGQKHAAMVKKQEAGTADPGT* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl11g00886 338 Pfam Zinc-finger of C2H2 type 198 221 - -
Eupl11g00886 338 Pfam Zinc-finger of C2H2 type 300 322 - -
Eupl11g00886 338 MobiDBLite consensus disorder prediction 21 58 - -
Eupl11g00886 338 SUPERFAMILY beta-beta-alpha zinc fingers 296 330 IPR036236 -
Eupl11g00886 338 Gene3D Classic Zinc Finger 185 229 - -
Eupl11g00886 338 Gene3D Classic Zinc Finger 275 331 - -
Eupl11g00886 338 MobiDBLite consensus disorder prediction 246 282 - -
Eupl11g00886 338 PANTHER ZINC FINGER PROTEIN 385B-LIKE 1 333 - -
Eupl11g00886 338 MobiDBLite consensus disorder prediction 1 60 - -
Eupl11g00886 338 SUPERFAMILY beta-beta-alpha zinc fingers 185 228 IPR036236 -
Eupl11g00886 338 SMART ZnF_U1_5 194 228 IPR003604 GO:0003676|GO:0008270
Eupl11g00886 338 SMART ZnF_U1_5 295 329 IPR003604 GO:0003676|GO:0008270
Eupl11g00886 338 MobiDBLite consensus disorder prediction 250 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl11g00886 Eupl-Chr11 11335770 11354978 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl11g00886 193 331 C2H2 Transcription Factor Family AT5G61190 33.094 2.08e-14 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl11g00886 - - tss:122656194 395.201