Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl11g00869 ATGTTGTCACTGCGCTCCTCAATCCTTCCATCTGAAGAGGATAACAAAGGGAGCATCATACGTTCTAGGGTTGTATCGGGAATAGTGCTTGTACTCAAGAAGGAGAACATGGAGCCGCAAATCAATCTCCCCTCAAACCTCTGCAATTCCTTCTATGAATCGATGGAAATCACTGAGGAGCAGAGAAAAAGAGCAGAGACGAACCGACTGGCTGCTCTGGCGAAGCGTAAGGCCACAGCGGCCGTGAAAGAAGACGCATGGAAGCTCTTCAAATGCCGCAAGATATCCCCGGAACCCGGTGCGCTCCCGAAACCTGAAAATCTATTTGCCAACGGATTCCCGAATTCTACAAATCCTTATACAGAGAAATTTCGCGTCAGGCTCGAGGTCTGTTCTCCCGATTCATTTTCCATCACGCCGGAGGCATTGGCGGATTCTCCTTATCCTGGAGAAACCGAGTGCTTGCAGAGGCTCAGTTCGTGGCTTGCATTTGTTGTGCCCTCTCACCATACTCAAAATCAGAGTGGTGGAATGTCTTCTGTTTATAAGCTCAGGGATTACGATATGGTACTAAAATGTTTAAAGAAGTTCAAAGGCATTGAATTGCAAGAGATTCCGTGGAGAACACTTAATGTTGTCCAGAAACTTTCACATTCCTTTGTTGCGGAGCGTTGGATACCTTGCATGCCGGAGCATTTGTCTGACGATGATGTTGATGCATTGATAAGGAAGCTGCCTAAAATTCTATTAAATGCACTTATGCCGTTTCAGCTTGATGGTGTGAGATTTGGTTTGCGAAGGGGTGGGTGCTGTCTCATTGCAGATGAAATGGGGCTAGGGAAAACTATTCAGGCAATTGCGATTGCGTGCTGTTTTATGAATGAAGGTCCTTTGCTTGTTGTGTGCCCAGCTATTTTGCGATTTTCATGGGCAGAAGAGTTAGAGCGTTGGCTTCCCTTTTGTTTACCTGCAGATATTCATCTTGTTTTTGGTCATCGAAATAATCCTGCCTATTTGACAAGATGTCCTAGAGTTGTGGTTATCTCATATACAATGCTTAATCGACTGCGGAAGAGTATGCTAGATCAAGAATGGGCTCTTTTGATTGTTGATGAATCTCACCATTTACGATCTACAAAGAAAACATCAGAACCAGAAGAGATAAGAGCTGTCCTAGATATGGCAACAAAAGTCAAACGCAAAATTCTGCTTTCTGGGACGCCTTCTTTGTCAAGGCCATATGACATTTTTCATCAAATAAATATATTATGGCCTGGTTTGCTGGGAAAGAACAAATATGAATTTGCAAAGACATATTGTGCAGTACAATTTGTTCATGGTTCTCAAGGGAAGATTTTCCGGGATTTCTCAAAGGGCATTCGCTTGGAGGAGTTAAACGTGCTACTTAAGCAAACTGTCATGATAAGGCGTTTGAAGGAGCATGTGTTAATACAACTACCGCCCAAACGTCGACAAATCATAAGATTGATGCTGAAGAGACAAGATATTATCTTAGTAGTTGCTGCTAAGGTGGGTGACATTTGTTGCACGGAAAGCCGAAAAGAAGTTGGACCTGTGATGAATCATTGCACTTCCGACATTGATGCTGATGGAGACGGGTCTGTAGAGATTTTTAATGAGTGTGATGATAATAGTGATTGTCATAGAACTTCAAGGCAACTTTCCGATCAAGAACTTGGTATTGCAAAGCTTTCCGGGTTCCGTGAGTGGCTTTCCATCCATCCAATTGTTACAGAATCAGAATGTGCAAGAAATTTGGACATGGATATTAGCTCTCACAAAATGATAATTTTTGCTCATCACCTGAAGGTTCTTGATGGTATTCAGGAGTTTGCATGTGAGAAAGGAATTGGGTTTGTCCGGATTGATGGGCACACACTCCCTAGAGATAAGCAATCAGCTGTACAAGCATTTCGATCATCGGCAGAGGTCAAGATTGCAATAATTGGAATAACTGCTGGGGGAGTTGGACTAGACTTTTCATTAGCCCAAAATGTTGTTTTCTTGGAGATGCCAAAATCTGCATCGGACATGCTACAGGCTGAGGATAGAGCTCATAGGCGAGGGCAAACCAATGCGGTGAACATATACATCTTTTGTGCAAAGGATTCTTCAGATGAGTTACGTTGGCAGAATTTAAACAAGAGTCTCCCCAGGGTTTCAGCAATGATGAATGGAAAATATGATGCAGTAAAAGAGATAGCGGTCGAGAGAGTTTCTGATCTAGGCTTTGAAGGGGATTTTGCTCAATATGAAAATTCGAAAGGAAATGAGACCGGGGATTCGAAAAGTGGAGCTTCAGGTTCAAATCCTGTCAGTAAAACTGACAACACTACTGGTGAAAATGGATTATCGGAGACTGCAGTATGTAATGAACTCATCAAAGTAGAGTCAACAAACTCCCAGAGTACTGCCATAAATCTGATGCGACATATTGAAATGTGCAAGGGTAAGCATAGATCTGAAAAGCAGGTTGAAGCTGATCCAAATAGTTCAACCCAAACAGATTCAATTGATTTTGAGGTTGATAGGGTTTCTGATGTAGAGATGGTCGAGGATTCTGTTACAAATGGAAGGTTAGAAGACTATACTTCTGAAGTTTTGAGAAGTGGAAGTTCTGACGTAGTTTCTACACAAAAATTGGATGAAGCAAGTGACACATATGAGCTGTTGGAGCATGCAGCACTTGAAGGGATTTTGCTCACAGAGCCAACCATTTCTCAAAATATTTCGGTAAATTCAAGAGAGCAGGCAGAGAAAATGTACACTGTAACATCTGAAAAAAATGAAGACGGACCTGTTGAACTGATTAAAGCTGATGCAAGTAGTGTCATTGCAGCAGATTCTCTGCGATTTGAGTTAAGTCAATACACTGGCCGGGTCCACTTGTACACTTGCATTACAGGAAAGGATTCAAGACCAAGGCCACTTTTTGAGAATTTCCGACCAGAGGAACTAGAGTCACTGAACCTTTCTGCTGCCGATATAAGCAAGAAAACTGATCAAAAATTTATCAAGGAAAATCCAGCATATAAGGATGTTCTTCTGGCATTCATCAAGGAGTGGAACAATCTAACAGCCATTGAACGAAAGAAATTGCTTGGGAAGCCTTTACAACTTCCATTAAGTGTTGAACTGTGCTATCTGAAAGATAGCATTAACCATGGAAATGGGGGACTGCTTAAAGGTGGAAGCAAGCGACGTGCTACACCTTTGTATGACATAAGCCATCCACTGCCCGCAAATGCCATCTGGAAGAAGATTTCTCTTTGTAGTGGCTATGGGAGAAAAGAGAAAGAATACATTCAGGGTTGGACCATGACGGGTGAACCACTCTGTAAACTCTGTCAAACACCGTGCAAGGGTAAGCTTGCCAAGACACCTGAATTTTTTGAGGATCTGTTCTGTAATTTGGGCTGCTTTGAAGAGTTTCGTATAAGAACCAGTCAAAGATCACTACGTGAGGCACTTTTCCAAATAGAACATGGCATTTGCACAGTGTGCAATCTGGACTGCCATAAACTTGTAGAATACATAAGACCTTTATCTGTTGCGAGGCGGCGAGAGTACATTGAGAAGGTAGCTCCAAAGGTGGCGAGTCATAAGAAATTACTTGATAAGCTCGTCTATGAACCAAGCGAGGGCAATGCATGGCATGCAGACCACAAAGTACCAGTTTACCAAGGGGGAGGGGAATGTAAACTAGAGAACATGAGGACTCTCTGTGTAGCCTGTCATTCTGAGGTTACTGTAGCTCAATGTGCTGAACGACGTCTCACAAGGATCAAGGCTAAGAAAGAACTCAGAATCATCCTGAAAGACCTCAAAGATGGTGGCAAAATGGAACATACCAACTCTGACTTAGAGGGCCGAGAGCACTTGGACATGGAAGAGAATACAGTTGATGATGGACTGTTAATTACAGTGCCCGGTAGTGCATACGGTAGTGGGAAAAGAACAGTTACTGAAAGCAATGAACATAAAAGTTCCTCAAATACTGAATAA 4026 0.4257 MLSLRSSILPSEEDNKGSIIRSRVVSGIVLVLKKENMEPQINLPSNLCNSFYESMEITEEQRKRAETNRLAALAKRKATAAVKEDAWKLFKCRKISPEPGALPKPENLFANGFPNSTNPYTEKFRVRLEVCSPDSFSITPEALADSPYPGETECLQRLSSWLAFVVPSHHTQNQSGGMSSVYKLRDYDMVLKCLKKFKGIELQEIPWRTLNVVQKLSHSFVAERWIPCMPEHLSDDDVDALIRKLPKILLNALMPFQLDGVRFGLRRGGCCLIADEMGLGKTIQAIAIACCFMNEGPLLVVCPAILRFSWAEELERWLPFCLPADIHLVFGHRNNPAYLTRCPRVVVISYTMLNRLRKSMLDQEWALLIVDESHHLRSTKKTSEPEEIRAVLDMATKVKRKILLSGTPSLSRPYDIFHQINILWPGLLGKNKYEFAKTYCAVQFVHGSQGKIFRDFSKGIRLEELNVLLKQTVMIRRLKEHVLIQLPPKRRQIIRLMLKRQDIILVVAAKVGDICCTESRKEVGPVMNHCTSDIDADGDGSVEIFNECDDNSDCHRTSRQLSDQELGIAKLSGFREWLSIHPIVTESECARNLDMDISSHKMIIFAHHLKVLDGIQEFACEKGIGFVRIDGHTLPRDKQSAVQAFRSSAEVKIAIIGITAGGVGLDFSLAQNVVFLEMPKSASDMLQAEDRAHRRGQTNAVNIYIFCAKDSSDELRWQNLNKSLPRVSAMMNGKYDAVKEIAVERVSDLGFEGDFAQYENSKGNETGDSKSGASGSNPVSKTDNTTGENGLSETAVCNELIKVESTNSQSTAINLMRHIEMCKGKHRSEKQVEADPNSSTQTDSIDFEVDRVSDVEMVEDSVTNGRLEDYTSEVLRSGSSDVVSTQKLDEASDTYELLEHAALEGILLTEPTISQNISVNSREQAEKMYTVTSEKNEDGPVELIKADASSVIAADSLRFELSQYTGRVHLYTCITGKDSRPRPLFENFRPEELESLNLSAADISKKTDQKFIKENPAYKDVLLAFIKEWNNLTAIERKKLLGKPLQLPLSVELCYLKDSINHGNGGLLKGGSKRRATPLYDISHPLPANAIWKKISLCSGYGRKEKEYIQGWTMTGEPLCKLCQTPCKGKLAKTPEFFEDLFCNLGCFEEFRIRTSQRSLREALFQIEHGICTVCNLDCHKLVEYIRPLSVARRREYIEKVAPKVASHKKLLDKLVYEPSEGNAWHADHKVPVYQGGGECKLENMRTLCVACHSEVTVAQCAERRLTRIKAKKELRIILKDLKDGGKMEHTNSDLEGREHLDMEENTVDDGLLITVPGSAYGSGKRTVTESNEHKSSSNTE* 1342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl11g00869 1341 Gene3D - 231 473 IPR038718 -
Eupl11g00869 1341 Pfam HNH endonuclease 1223 1256 IPR002711 GO:0003676|GO:0004519|GO:0008270
Eupl11g00869 1341 MobiDBLite consensus disorder prediction 759 791 - -
Eupl11g00869 1341 Pfam SNF2-related domain 270 501 IPR000330 GO:0005524|GO:0140658
Eupl11g00869 1341 FunFam SNF2 DNA repair protein, putative 227 476 - -
Eupl11g00869 1341 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 59 1274 - -
Eupl11g00869 1341 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 592 747 IPR001650 -
Eupl11g00869 1341 CDD DEXHc_HARP_SMARCAL1 253 477 - -
Eupl11g00869 1341 SMART helicmild6 613 696 IPR001650 -
Eupl11g00869 1341 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 220 477 IPR027417 -
Eupl11g00869 1341 Gene3D - 1149 1280 - -
Eupl11g00869 1341 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 364 745 IPR027417 -
Eupl11g00869 1341 Gene3D - 583 770 IPR027417 -
Eupl11g00869 1341 SMART ultradead3 249 435 IPR014001 -
Eupl11g00869 1341 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 262 426 IPR014001 -
Eupl11g00869 1341 MobiDBLite consensus disorder prediction 1322 1341 - -
Eupl11g00869 1341 Coils Coil 55 75 - -
Eupl11g00869 1341 CDD SF2_C_SNF 598 707 - -
Eupl11g00869 1341 CDD HNHc 1217 1257 IPR003615 -
Eupl11g00869 1341 MobiDBLite consensus disorder prediction 757 791 - -
Eupl11g00869 1341 MobiDBLite consensus disorder prediction 1314 1341 - -
Eupl11g00869 1341 Pfam Helicase conserved C-terminal domain 596 696 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl11g00869 Eupl-Chr11 11131933 11165236 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl11g00869 267 714 RAD5 or RAD16-like Gene Family AT1G02670 22.050 2.46e-13 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Eupl11g00869 SNF2_N 9.4e-26 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl11g00869 K25861 - msin:131219229 1571.6