Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl11g00860 ATGGAATCTGTTGTCCGGCAGGCAAAGAAGTTGGCCGTTTCGTACTGCCGGATCCATCTGGGCAATCCCGATATGTTTACCACCAACGAGAACAATTCGAATAAGGCAACAGTTTCGCCTTTGCTGCCTTTGATATTCTCGGAAGTTTCGACCCCAATTGATGGGTTTGGGCAAAGTAGTGTTAGTTCCCCGCCCGGGTTCTTAGAGGAATTCTTCCAAGACTCAGACTTGGATAGCTTGGATACAATTTTGAAGGGCTTGTATGAGGATTTGAGGGGAAGTGTGCTTAAGGTATCCGCGCTCGGGAATTTCCAGCAGCCATTGAGAGCATTGATGATGTTGGTTAGTTTTCGCAACGGTGCGAAAGCTCTGGTGAATCACCCATGGTGGGTCCCAAGAGGAGCTTATGTGAACGGGCGTGTAATTGAGATGACAAGCATTTTGGGTCCTTTTTTTCATGTCAGTGCTCTTCCTGATCATACAATCTTCAAGAGTGAGCCAGACGTTGGCCAGCAATGCTTCTCAGAGGTATCAACTCGTCGACCGGCTGATTTGTTGTCTTCCTTCACAACCATTAAGACTGTAATGAATAACTTATATGATGGCCTTGGAGAAGTTATTCTCTCTCTCCTAAAAAATCCTGATACTCGAGATAGCGTTCTTGAGTATCTTGCCGAGGTGATCAAGAAAAACTCATCAAGGGCTCATATGCAGGTTGATCCGTTATCTTGTGCAAGTTCGGGCATGTTTGTCAATCTCAGTGCTGTAATGCTTCGGCTATGTGAGCCCTTCTTAGATGCAAATTTGACAAAAAGGGACAAGATCGATCCGAAATATGTATTTTACAATACTCGTTTGGATTTAAGAGAGTTGACAGCTCTACATGCATCATCCGAAGAAGTTGCAGCATGGATCGATAAAGATAACCCTGAGAAAACTGATGGCTTCAGACATAAAAGTGATGAAGAGAACCGAATATTACAATCTCACGAAGCCACCAGCTCTGGCGGTAATACTGGTGTAGCTCCTGTCCTCTCTAAAGCCAAGCCAATGTCAGGTTGTGCTGGAAAAACAAAATATGCGTTTATTTGTGAATGTTTCTTTATGACTGCGAGGGTGCTCAACTTGGGGCTGTTAAAAGCATTTTCTGACTTTAAGCGTCTAGTTCAGGACTTGTCCAGGTGTGAAGATACTCTGTCCACCTTTAAAGCAATGCAGGGGCAAGCGTCCTCTCCACAACTGGAGCTGGATATAGCTCGGCTTGAGAAAGAAATTGAGTTGTATTCACAGGAGAAGCTATGTTATGAGGCTCAGATACTGAGGGATGGAGCACTTCTTCAGCGTGCATTATCCTTCTACAGGTTAATGGTGGTTTGGTTGGTTGGCCTTGTGGATGGTTTTAAAATGCCTCTGCCGTCGAGTTGCCCAATGGATTTTGCTTGTATGCCCGAGCACTTTGTTGAAGATGCGATGGAATTGCTTATTTTTGCTTCTCAGATCCCTAAAGCTTTGGATGGCTTTGTACTGGATGATTTTATGAACTTTATAATCATGTTCATGGGGAGTCCAAAATATATCAGAAACCCTTATCTAAGAGCAAAGATGGTAGAAGTCTTGAATTGCTGGATGCCCCAAAGAAGTGGTTCATCTGCAACGGCCACCCTTTTTGAAGGGCATCCACTATCTCTCGAGTATCTTGTCCGGAATCTTCTGAAGCTTTATGTTGACATCGAGTTTACAGGTTCTCATACACAGTTCTACGACAAATTCAACATCCGCCATAATATTGCCGAACTTCTCGAATACTTGTGGCAAGTCCCTAGCCATCGTAATGCATGGAGACAGATTGCTAGAGAAGAGGAGAAGGGGGTTTATTTGAACTTTTTGAACTTCCTAATCAACGATAGCATATATCTGCTTGATGAAAGTCTTAACAAAATTCTCGAACTCAAAGGGATGGAAGCCGAGATGTCTAATACTGCAGAATGGGAGCGAAGACCAGCTCAAGAGAGGCAAGAGAGAACCCGACAATTCCACTCTCAAGAGAATATTATCCGAATTGATATGAAATTGGCAAATGAAGATGTGGGAATGCTGGCATTTACTTCAGAACAGATTACAGCTCCTTTCCTTCTTCCGGAAATGGTTGAAAGAGTAGCTAACATGCTCAATTACTTCTTATTACAACTTGTGGGCCCCCAACGAAGAGCTCTTAGTCTGAAAGACCCAGAAAAGTATGAGTTCCGGCCAAAACAATTGCTTAAGCAGATTGTCGACATATACGTTCATCTGGCAAGGGGAGATAAAGAAAATATTTTCCCAGCTGCCATCTCAAAGGATGGTCGATCATACAATGAGCAGTTGTTTACTGCTGCAGCAGATGTTCTGCATAGGATAGGTGAAGACGGGAGGGTGATTCAGGAATTCGTCGAGCTAGGCGCAAAAGCAAAGGTTGCAGCTTCTGAGGCAATGGACGCCGAGGCTGTCCTTGGCGAGATACCAGACGAATTCCTTGACCCAATTCAATACACATTAATGAAGGATCCTGTGATCCTACCTTCTTCGAGAATCACTGTAGACCGATCTGTCATCCAAAGGCACCTTCTGAGTGATAATAGCGACCCATTCAACCGTTCTCATCTTACTCAAGACATGCTCATTCCCAATACTGAACTGAAGTCAAGAATAGAAGAGTTCATCAAGTCTCAAAAATTAAAGAAGCATGGGGAAGGTCTAAGCATGCAAAGCACCAAGGCAGCTATGCAAACCGGGAATGATGCCGTGACTTCAATCGACTAG 2799 0.4394 MESVVRQAKKLAVSYCRIHLGNPDMFTTNENNSNKATVSPLLPLIFSEVSTPIDGFGQSSVSSPPGFLEEFFQDSDLDSLDTILKGLYEDLRGSVLKVSALGNFQQPLRALMMLVSFRNGAKALVNHPWWVPRGAYVNGRVIEMTSILGPFFHVSALPDHTIFKSEPDVGQQCFSEVSTRRPADLLSSFTTIKTVMNNLYDGLGEVILSLLKNPDTRDSVLEYLAEVIKKNSSRAHMQVDPLSCASSGMFVNLSAVMLRLCEPFLDANLTKRDKIDPKYVFYNTRLDLRELTALHASSEEVAAWIDKDNPEKTDGFRHKSDEENRILQSHEATSSGGNTGVAPVLSKAKPMSGCAGKTKYAFICECFFMTARVLNLGLLKAFSDFKRLVQDLSRCEDTLSTFKAMQGQASSPQLELDIARLEKEIELYSQEKLCYEAQILRDGALLQRALSFYRLMVVWLVGLVDGFKMPLPSSCPMDFACMPEHFVEDAMELLIFASQIPKALDGFVLDDFMNFIIMFMGSPKYIRNPYLRAKMVEVLNCWMPQRSGSSATATLFEGHPLSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIAREEEKGVYLNFLNFLINDSIYLLDESLNKILELKGMEAEMSNTAEWERRPAQERQERTRQFHSQENIIRIDMKLANEDVGMLAFTSEQITAPFLLPEMVERVANMLNYFLLQLVGPQRRALSLKDPEKYEFRPKQLLKQIVDIYVHLARGDKENIFPAAISKDGRSYNEQLFTAAADVLHRIGEDGRVIQEFVELGAKAKVAASEAMDAEAVLGEIPDEFLDPIQYTLMKDPVILPSSRITVDRSVIQRHLLSDNSDPFNRSHLTQDMLIPNTELKSRIEEFIKSQKLKKHGEGLSMQSTKAAMQTGNDAVTSID* 933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl11g00860 932 MobiDBLite consensus disorder prediction 915 932 - -
Eupl11g00860 932 FunFam Ubiquitin conjugation factor e4 a 832 910 - -
Eupl11g00860 932 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 832 910 IPR013083 -
Eupl11g00860 932 Pfam Ubiquitin elongating factor core 148 816 IPR019474 GO:0000151|GO:0006511|GO:0016567|GO:0034450
Eupl11g00860 932 ProSiteProfiles U-box domain profile. 832 906 IPR003613 GO:0004842|GO:0016567
Eupl11g00860 932 SUPERFAMILY RING/U-box 825 905 - -
Eupl11g00860 932 CDD RING-Ubox_UBE4A 835 904 - -
Eupl11g00860 932 PANTHER UBIQUITINATION FACTOR E4 2 908 IPR045132 GO:0000151|GO:0030433|GO:0034450
Eupl11g00860 932 SMART Ubox_2 836 899 IPR003613 GO:0004842|GO:0016567
Eupl11g00860 932 Pfam U-box domain 833 904 IPR003613 GO:0004842|GO:0016567
Eupl11g00860 932 Coils Coil 411 438 - -
Eupl11g00860 932 MobiDBLite consensus disorder prediction 910 932 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl11g00860 Eupl-Chr11 11038533 11052170 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl11g00860 1 925 U-box Gene Family AT5G15400 75.586 0.0 1439
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl11g00860 K10597 - ming:122091381 1597.79