LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Eupl11g00842	ATGGGGTGCATTACCTCGAAACAGGCAGTCTCAGTGACTCCTGCTTTAGATTACTCAGGAGCGTTTCGATACAATGGGTCGGGGGTTTTGGCTTCTTCGCTCCAACACCGAGCTGAATTGCCAGAACGGGAGAAGAAGAAGAAAGTGAAGTCGGGTGGCGGTGACTGCGAATTGGGGGAGTCGAAGAGGGGAAGCTCCAACAGTGGGGATTCATTGAGCTTGAGATTGGGGAATTTGCAGAAGTATGTGGAAGGGGAGCAAGTCGCAGCCGGTTGGCCTGCTTGGCTCACTGCTGTCGCCGGAGAAGCCATTCAGGGTTGGGTGCCCCTTCAAGCAGACTCTTTTGAGAAGTTGGAGAAGATTGGACAAGGTACATATAGCAGTGTGTTCCGAGCACGAGACCTGGAGAATGGGAGGATAGTTGCTCTAAAGAAGGTCCGGTTTGACAACTTCGAGCCCGAGAGCGTGAGGTTTATGGCACGAGAAATAATGATCCTCCGCAGACTAGACCATCCAAACATCATGAAATTGGAGGGGTTAATTACCTCACGATTATCATGTAGTGTATATCTCGTATTCGAGTACATGGAACATGATCTTGCTGGATTGTTGTCCTGCCCTGACATCAAGTTCAGCGAATCGCAGGTTAAGTGCTATATGCATCAGTTATTATCTGGACTTGAACATTGCCATTCGCGAGGTGTAATGCATCGGGACATTAAGGGATCCAATCTTCTGGTTAATAACGAAGGAATTCTGAAGATGGCTGATTTTGGCCTGGCAAATTTCTTTAACCCCAGACACAGGCAACCGTTAACTAGTCGGGTTGTGACTCTATGGTACCGTCCTCCTGAACTTTTGCTTGGGTCCACAGATTACGGAACATCTGTGGATTTGTGGAGTGTTGGTTGTGTATTTGCAGAACTTCTCCTTGGGAAGCCTATACTTCAAGGGAGAACAGAGGTTGAACAATTACACAAGATCTTCAAGCTCTGTGGTTCCCCACCCGATGAGTATTGGAAGAAGTCTAAATTGCCTCATGCAACTATATTCAAACCCCAGCATCCTTATGAGAGCTGTATTCAGGAGACTTGTAAAGATTTCCCAGAAACTGCCTTGAATCTGATAGAAACTTTTCTTTCTGTAGAACCTTGTAAGCGCGGGACTGCCACCTCTGCTCTTGCATCCGAGTATTTCACAACAAAGCCTTATGCATGCGATCCATCAACCTTGCCAAAGTACCCACCTAACAAAGAGATTGATGCGAAAAGTCGCGAGGTGGCACGAAGGAAAAAGGCTGGTGGGAGAGCGCATGGGCCTGAAGCAACAAGAAAACCGACAAGAGTATGCAAAGCTTTGCTAGAGCCAAACGGACTTGGTAGATCGGTTGCACAAACTGAGGAGTTGCAGGTCAATACTCAAGGTGCCCATAAAATCAATGACGACAGTGCACATTTACCTAAGGAAGACTCTGATGCTAGATTATGTGGGGAACTGCCCAAGCCATCGATTGATATGGTGCAACAGGCTTCCCATGTAAAGAATGCATCTCAGGGGAACCTTCCTTTCTCAGGTACCCTACACGTCACAGGATCAAGCAGCTTTGCCTGGGCAAAAAGGCGAAAAGAGGATGCAGCATCCATAAGATCACGCAGTACCTCTAGTTCAAGAGGCCAATTTACATTAGATCCCTCAAGTGTCTTGCAAGGGAGAAATACTTCAGGATCAAAAGGTCAAGAAAATGGGGATGTTTTATACGGGACCCATGTCAATTCTAGAGGCCATGACTCGTACGAGATTCCCAAGCATGGAATGCAGAAACAATGGAACCAGTTTGAGCGTCCGGATTCTTTCGATTCATCTGATGTCTACCATTCTCAGGAACTGTCAGCAGCACTTAATCAGAGAGTGGAAATGGCAGCTAAGAGAAACAATCCGGGTTATCACGATCAAGGAGACAGAGTTGAATTCTCAGGGCCCTTGTTGTCTCAATCACATAGAGTTGATGAACTCTTGCAGAGGCATGAACGTCATATCCGCCAAGCAGTCCGTAGGTCATGGTTCCAAAGAGGGATGTATCTGCCCATTATCATGGTTCAAAAGCTTTCTTCATCCTAG	2118	0.4688	MGCITSKQAVSVTPALDYSGAFRYNGSGVLASSLQHRAELPEREKKKKVKSGGGDCELGESKRGSSNSGDSLSLRLGNLQKYVEGEQVAAGWPAWLTAVAGEAIQGWVPLQADSFEKLEKIGQGTYSSVFRARDLENGRIVALKKVRFDNFEPESVRFMAREIMILRRLDHPNIMKLEGLITSRLSCSVYLVFEYMEHDLAGLLSCPDIKFSESQVKCYMHQLLSGLEHCHSRGVMHRDIKGSNLLVNNEGILKMADFGLANFFNPRHRQPLTSRVVTLWYRPPELLLGSTDYGTSVDLWSVGCVFAELLLGKPILQGRTEVEQLHKIFKLCGSPPDEYWKKSKLPHATIFKPQHPYESCIQETCKDFPETALNLIETFLSVEPCKRGTATSALASEYFTTKPYACDPSTLPKYPPNKEIDAKSREVARRKKAGGRAHGPEATRKPTRVCKALLEPNGLGRSVAQTEELQVNTQGAHKINDDSAHLPKEDSDARLCGELPKPSIDMVQQASHVKNASQGNLPFSGTLHVTGSSSFAWAKRRKEDAASIRSRSTSSSRGQFTLDPSSVLQGRNTSGSKGQENGDVLYGTHVNSRGHDSYEIPKHGMQKQWNQFERPDSFDSSDVYHSQELSAALNQRVEMAAKRNNPGYHDQGDRVEFSGPLLSQSHRVDELLQRHERHIRQAVRRSWFQRGMYLPIIMVQKLSSS*	706

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Eupl11g00842	705	PANTHER	CELL DIVISION PROTEIN KINASE	113	403	-	-
	Eupl11g00842	705	CDD	STKc_CDK9_like	115	399	-	-
	Eupl11g00842	705	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	235	247	IPR008271	GO:0004672\|GO:0006468
	Eupl11g00842	705	Gene3D	Phosphorylase Kinase; domain 1	102	197	-	-
	Eupl11g00842	705	Gene3D	Transferase(Phosphotransferase) domain 1	198	437	-	-
	Eupl11g00842	705	MobiDBLite	consensus disorder prediction	410	445	-	-
	Eupl11g00842	705	FunFam	probable serine/threonine-protein kinase At1g54610	198	438	-	-
	Eupl11g00842	705	ProSiteProfiles	Protein kinase domain profile.	115	399	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Eupl11g00842	705	MobiDBLite	consensus disorder prediction	41	57	-	-
	Eupl11g00842	705	Pfam	Protein kinase domain	115	399	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Eupl11g00842	705	MobiDBLite	consensus disorder prediction	549	581	-	-
	Eupl11g00842	705	ProSitePatterns	Protein kinases ATP-binding region signature.	121	144	IPR017441	GO:0005524
	Eupl11g00842	705	MobiDBLite	consensus disorder prediction	41	70	-	-
	Eupl11g00842	705	FunFam	probable serine/threonine-protein kinase At1g54610	102	197	-	-
	Eupl11g00842	705	MobiDBLite	consensus disorder prediction	418	445	-	-
	Eupl11g00842	705	MobiDBLite	consensus disorder prediction	543	586	-	-
	Eupl11g00842	705	SUPERFAMILY	Protein kinase-like (PK-like)	109	405	IPR011009	-
	Eupl11g00842	705	SMART	serkin_6	115	399	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Eupl11g00842	Eupl-Chr11	10843620	10850832	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Eupl11g00842	107	431	Core Cell Cycle Gene Families	AT5G10270	48.974	1.08e-108	337

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Eupl11g00842		Pkinase	1.2e-68	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Eupl11g00842	-		-	nnu:104598040	1082.4