Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl11g00830 ATGGCCGACAAAGCTCATTCTTCCTTTGGAGAGAGCTCCAACGGATTCGACGATGTTGAAGAGTTCCTCTGGGCGGATGAAGCGGCAATGAACATTTCGTGGGACCGTTTCAGTCAGGTTTTCGATCTTATGCAGAAGGGTAATCGATATTTTCGAGAGAATCGAATTGAAGAGGCAATCAATTGTTACTCTAAAGCTCATAACTTTAAGCCAGGTGATCATGTTATTCTCAGCAATCGAAGTGCTGCTTTTAGTAGGATTAGCCGATTTCTGAAAAATAGACCTGCGTCTGATTCTGAATATCAACCAGTGAGCGGACTGGATCCTACAACTCATGCTGAACGTGCGTTGAAGGATGCCGAGAAGGTGATGAACTTTCGAAGTAATTCAGCAAAATCATATTTTCTGAAGGCCAATGCCCTCATGTTGCTAGAACGATATGAGGAGGCACGAGAAACTCTTCTTTCAGGCCTTCAGGTTGATCCGCTTAGCAATCCTCTTCAGGTCTTTCTTCGGAGTTTGGAGATGATATCAGCCGGTTCGATCAGAAAGACAAAACATGGGAAACCACAACGTACTGACGAATTTGATTGCACACTTTGTTTGAAGTTGTTATATGAACCTATAACAACTCCCTGTGGGCATTCTTTTTGCCGCTCATGTCTATTTCAGTCTATGGATCACGGTAACAAATGTCCTATGTGCCGAACAGTACTTTTTATTAGTCCCAAAACATATTCAACGAGTGTGACACTGAACAACATAATACAGAAGAACTTTCCAGAGGAATATGCTGAAAGGAAGTCAGAGCATGACAATTTGACAAATTTAGGTGTTGATCTGATGCCTCTTTTTGTCATGGATGTTGTCCTCCCATGCCAGAAGTTGTCACTCAATATTTTTGAGCCCCGCTACAGACTTATGGTGAGGAGGATAATGGAAGGAAATCATCGGATGGGAATGGTTGCCTTTGATTCTGCGACAGGTACCATAGCTGATTTTGCTTGTGAAGTTGAAATAACTGAGTGTGAGCCACTTCCAGATGGACGTTTCTATTTAGAGGTGGAAGGTCGCAGAAGATTTCGTATCCTCCGATCTTGGGATCAAGATGGGTATCGCATTGCGGAGGTGGAATGGATTCAGGATATTTATCCACCAGAAGGGACGGAAGAAAGGGGAGATTTACAGGAAAAGACTAGTGATGCAGCGGCCATTGCTCGCTCATGGATAAGGCAAGCGAAACAAGCGGCACGAGCAGATAGGAGATCTAGGCGTTTGGAACTTCAAGCCGAAGGGATGCCTGGGCCGCAGGATCCCGAGCGTTTCAGTTTCTGGCTTGCTAATCTATTGAACCTGCGGCCTTTGGAGAGATTGGAACTCCTGCGCTTAAGAGATACACGAGAGAGGATACAACGTGGGCTTATTTATTTGAAAGCTGAAGAACAGGGCTGTCGAATTGCATGA 1464 0.4454 MADKAHSSFGESSNGFDDVEEFLWADEAAMNISWDRFSQVFDLMQKGNRYFRENRIEEAINCYSKAHNFKPGDHVILSNRSAAFSRISRFLKNRPASDSEYQPVSGLDPTTHAERALKDAEKVMNFRSNSAKSYFLKANALMLLERYEEARETLLSGLQVDPLSNPLQVFLRSLEMISAGSIRKTKHGKPQRTDEFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDHGNKCPMCRTVLFISPKTYSTSVTLNNIIQKNFPEEYAERKSEHDNLTNLGVDLMPLFVMDVVLPCQKLSLNIFEPRYRLMVRRIMEGNHRMGMVAFDSATGTIADFACEVEITECEPLPDGRFYLEVEGRRRFRILRSWDQDGYRIAEVEWIQDIYPPEGTEERGDLQEKTSDAAAIARSWIRQAKQAARADRRSRRLELQAEGMPGPQDPERFSFWLANLLNLRPLERLELLRLRDTRERIQRGLIYLKAEEQGCRIA* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl11g00830 487 SMART ring_2 198 235 IPR001841 -
Eupl11g00830 487 SMART lon_5 281 479 IPR003111 -
Eupl11g00830 487 Pfam ATP-dependent protease La (LON) substrate-binding domain 282 478 IPR003111 -
Eupl11g00830 487 SUPERFAMILY PUA domain-like 282 477 IPR015947 -
Eupl11g00830 487 Pfam Tetratricopeptide repeat 131 162 IPR019734 GO:0005515
Eupl11g00830 487 Gene3D - 415 479 - -
Eupl11g00830 487 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 183 278 IPR013083 -
Eupl11g00830 487 ProSiteProfiles TPR repeat profile. 40 73 IPR019734 GO:0005515
Eupl11g00830 487 SUPERFAMILY RING/U-box 192 260 - -
Eupl11g00830 487 SMART tpr_5 131 164 IPR019734 GO:0005515
Eupl11g00830 487 SMART tpr_5 40 73 IPR019734 GO:0005515
Eupl11g00830 487 ProSiteProfiles Zinc finger RING-type profile. 198 236 IPR001841 -
Eupl11g00830 487 Gene3D Tetratricopeptide repeat domain 38 176 IPR011990 GO:0005515
Eupl11g00830 487 SUPERFAMILY TPR-like 41 167 IPR011990 GO:0005515
Eupl11g00830 487 CDD RING-HC_LONFs_rpt2 195 239 - -
Eupl11g00830 487 Pfam Zinc finger, C3HC4 type (RING finger) 198 235 - -
Eupl11g00830 487 ProSitePatterns Zinc finger RING-type signature. 213 222 IPR017907 -
Eupl11g00830 487 Gene3D - 280 382 IPR046336 -
Eupl11g00830 487 ProSiteProfiles Lon N-terminal domain profile. 279 479 IPR003111 -
Eupl11g00830 487 PANTHER RING FINGER PROTEIN 127 29 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl11g00830 Eupl-Chr11 10610578 10627153 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl11g00830 193 239 C3H Transcription Factor Family AT1G74990 40.000 8.93e-09 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl11g00830 - - nnu:104598053 769.229