Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl11g00784 ATGATGGGAAGGGTTAAGCTAAAGATAAAGAGATTAGAGAATACGAGTGGCCGGCAAGTGACCTATTCAAAACGGAGGGCTGGGATCTTGAAGAAAGCTAAGGAGCTATCTGTATTGTGTGACATAGACATTGCCCTTCTCATGTTTTCACCAACTGGCAAGCCCACATTATGCCTCGGAGAGCGCAGCAACATTGAAGAGGTTATTGCAAAGTTTGCTCAATTAACTCCACAAGAAAGAGCGAAAAGGAAGTTGGAGAGCCTTGAAGCACTAAAGAAAACATTTCAGAAGTTGGACCACGATGTAAATATACAAGACTTTCTGGGTACAAGTACTCAAACAGTTGAGGAACTGACTAACTATTCAAGGCTATTGCAAGCTCAACTGTCAGAAATGCATAAGAGATTAAGCTATTGGACTCATCTAGATAAGATCAACAATATTGAACATCTTAGGGCAATGGAAGAATTTCTCAAGGAATCGCTTGATCGCATTCGAACACATAAGGGAAATTTCAGTAAGGAGCAACTTATGGCACTAGAATGCACTAGCCAGTTCCAGAATGGGATGCATTTACCCTTAGGAATGGGTGGAGAGCAACAAGCCCAATCGATATCATGGATGCCTAATATTGACAGTGAACATATGATGCTATCCGAGAACCCAAACTTACTGCCTCAGAGAGATATGGAGTGCTCAACAGATGCCTCCCTTCCAAGCTATTCTGGTTACTTCAGCACAGGCAAGCAAGTGGAAATTGATTCTTCGGGGAGAGAAGGTTGTGACTTGAATGAGTTAAGCAGAACTACGTGCTTAAGGCTACAACTGGGTGGCCAGTACCCTTACCCGCCTTATAGTCTCAATTTGCTGGGTGATAAGAAATTTAAGCCTGAGAGCGGGATAAATTTGCAAGAACCCCCTGTGGACTATCAAGTTAGCAGCAGCTTTGACCAACCTAGATCGGGGTACGACACCAGCCACCATAGTTGGGCTTCCACGTCTGGACATTGTGACGTTGCCATGTTGAATGAGCACTCATATACCCAGGCAAGAGTTAGCACAGTACACTGGTTTTGCTCAAATTGA 1086 0.4374 MMGRVKLKIKRLENTSGRQVTYSKRRAGILKKAKELSVLCDIDIALLMFSPTGKPTLCLGERSNIEEVIAKFAQLTPQERAKRKLESLEALKKTFQKLDHDVNIQDFLGTSTQTVEELTNYSRLLQAQLSEMHKRLSYWTHLDKINNIEHLRAMEEFLKESLDRIRTHKGNFSKEQLMALECTSQFQNGMHLPLGMGGEQQAQSISWMPNIDSEHMMLSENPNLLPQRDMECSTDASLPSYSGYFSTGKQVEIDSSGREGCDLNELSRTTCLRLQLGGQYPYPPYSLNLLGDKKFKPESGINLQEPPVDYQVSSSFDQPRSGYDTSHHSWASTSGHCDVAMLNEHSYTQARVSTVHWFCSN* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl11g00784 361 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 56 IPR002100 GO:0003677|GO:0046983
Eupl11g00784 361 ProSiteProfiles MADS-box domain profile. 2 54 IPR002100 GO:0003677|GO:0046983
Eupl11g00784 361 FunFam Agamous-like MADS-box protein AGL30 15 97 - -
Eupl11g00784 361 SMART madsneu2 2 61 IPR002100 GO:0003677|GO:0046983
Eupl11g00784 361 Gene3D - 15 97 IPR036879 GO:0003677|GO:0046983
Eupl11g00784 361 Coils Coil 78 98 - -
Eupl11g00784 361 PANTHER SERUM RESPONSE FACTOR HOMOLOG 4 206 - -
Eupl11g00784 361 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Eupl11g00784 361 PRINTS MADS domain signature 39 60 IPR002100 GO:0003677|GO:0046983
Eupl11g00784 361 PRINTS MADS domain signature 24 39 IPR002100 GO:0003677|GO:0046983
Eupl11g00784 361 PRINTS MADS domain signature 4 24 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl11g00784 Eupl-Chr11 10070693 10081334 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl11g00784 2 267 Type I MADS-box Gene Family AT2G03060 56.364 8.47e-104 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Eupl11g00784 SRF-TF 1.2e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl11g00784 - - ming:122076733 543.888