Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl11g00764 ATGGACGTGGAACCTCGTGATGGTTTCTCCCTTACCACCCCTCTCGTGTTTGACGGTGGATGTGAGCACGGTGAGAATAAGAACGGAAAAGATGAGGATGTGGAGACGCAGCGTTGCGAACCCAACGCAGCCACCGCTACCTTCTTTAAAACTTGCTTCAATGGACTCAACGCTTTGTCAGGAGTTGGGATACTATCAGTTCCATATGCACTATCATTAGGAGGGTGGCTAAGCTTGATGCTTCTTTTCATTATCGCCTTAGCAACTTGCTTCACTGGATTACTAATGCGTCGATGCATGGATGTCGATTCACATATCAGAACTTATCCCGACATTGGCGAGCGCGCTTTTGGATACAAGGGAAGAATAATAGTTTCAATGTTCATGTATTTAGAGCTCTACTTAGTTGCAACGGGGTTCTTGATACTGGAAGGGGATAACTTACATAATCTCTTCCCAAACATGGGCTTTGATTTGGGAGGGATAAGAATTGGCGGGAGACAAGGATTTGTTATAATTGTGGCCCTTATAATTTTGCCTTCAATGTGGTTACATGACTTGAGCATGCTTTCTTATATATCTGCTAGTGGTGTGTTAGCTTCGATTGTCGTCATCGGCTCTATTCTGTGGGTTGGTGCAGTCGATGGAGTCGGATTTCATGGAAACGGAAGGCTTTCGAATTTGAATGGGATCCCTAATGCTGTTAGTTTATATGCCTTCTGTTATTGTGCTCATCCAGTTTTCCCCACACTATATACTTCAATGAAAGATAAACGCCAATTCTCAAAGGTCATGCTTGTTAGCTTTCTCCTATGTACGATCAGTTATGCATCGATGGCGGTTTTAGGGTATCTGATGTACGGCGACAATGTAAAATCTCAAGTGACATTGAACCTGCCCACTGATAAAATTAGCTCAAAGATAGCAATATACACCACTCTAGTCAATCCGGTTACGAAATATGCATTAATGATATCCCCTTATCTCCCTTGCCCTCCACATGACGCATACAGAGCCTCTCACGGAATTTTCAACACTACAATGGCAGCCTCAACTCCCCCTCTAAACCCTCTCTCTTCCCCGAAATCCAAAACCAACAGCCCAAAAGAAACACGTCCATCTCCTTCTCCCCTCTCTCTCTTACCCAAATGCAACTCCCTTAGAGAACTCAAACAAATCCAAGCCGCTACAGTGAAATCCAACCTCCAACATGACATCTCCGTCCTCACCAAGCTCATTAACTTTTGCACCCTCAATCCCTCCACCACCATGGACCATGCCCAACACTTGTTCGACCAAATTCCCCAACCAGACATTGTCCTTTTTAACTCCATGGCTCGTGGTTACGCTCGAACCAACACCCCTGTTCGAGCCCTGTCCCTCTTCTCTCACATCCTCAATTTGGGGCTCCAACCGGATGACTACACCTTCCCATCTCTTCTTAAGGCCTGTGCCAATTCTAAAGCCTTAGAGGAAGGAAAACAAGTCCATTGCCTTGCTATCAAGCTTGGGTTGCACCATAACATCTATGTCCACCCTACACTTATAAACATGTACACCGAGTGCGGTGACATTCGTGCGGCACGCCGAGTCTTCAACAAGATATTAAACCCATGTGTTGTTACTTACAATGCGATCATCACTGGCTATGCTCGGACTAGTCAGCCGAACGAGGCGTTGGCACTGTTTCGAGAATTGCAAGCGAGCAATGCCAAGCCCACAGATGTTACAATGCTTAGCATTTTGTCATCGTGTGCTTTGTTAGGAGCCTTAGATCTAGGAAAGTGGATACATGAGTACATTAAGAAGAATGAGTTCGATGAGTATTTGAAGGTGAACACGGCTTTGATAGACATGTATGCGAAGTGTGGGAGTTTGGAAGATGCGGCTTGTGTGTTTGAGAACATGCATTCTAGAGATACGCAAGCATGGTCGGCAATGATTGTCGCTTATGCAATTCACGGGCATGGTAACAAAGCCATATCTATGTTTGAGGAGATGAAAACAGCAAGAGTTCGACCAGATGAAATTACATTTCTAGGTATTTTATATGCATGTAGTCATACAGGAATGGTGGATGAAGGTTGTAGCTATTTCTACAGCATGAGAGATCGTTATGGGATTGTTCCTGGGATCAAGCATTATGGGTGTATGGTGGATTTGCTAGGTCGAGCTGGGCGCTTAGATGAGGCTTATAAGTTCATTGAGGGGTTGCCAATCAAGCCCACGCCCATACTCTGGCGAACCTTGTTATCTGCTAGTAGCAGCCATGGCAATGTAGAATTGGGGAAGCGTGTAATCGAGCACATTTTTGAGTTGGATGTCTCACATGATGTTTGTAGTGAGTCTTTTGAAGGATTTGGCGTTTTGGATGAAGTGGGTGTTGGCCTTGAACCAGGAAAAGAGACTGTGCTGAGTGATAATCGAGAAGGTGTTGAGGAATTGATGAAAGTGAAGAAGCCAAAGAGGTGCAGAGAAGAGAAAAATGTTAGTTGGAATGAATTATCCCGTGGTACTATATCTCGTTTTTTTTACATGCCGATATCACAAGCTGCAAAGGAGCTTAACGTTGGATTGACGCTGTTGAAAAGGAGATGTAGGGAACTGGGTATACCTAGATGGCCCCATAGGAAGTTGATGAGCTTGCAAACCCTTATCAAGAACATCCAGGAATTGGCGAGGGAGGAAGGAGATTCAAAAGTAAGAGACGAGGCTGTAGGGATGTTGGAGCAAGAAAGGAAGCTGATGGAGGAGATGCCAGGGATTGAACTGGAGGAAAAAACGAAGAAGCTAAGACAAGCTTGTTTTAAGGCTAATTACAAGAAAAGAAAGGTTATGGGTCGGGATGATGGAATTGCAGTCTTCGTCCCTTATCGCCCATTCGTGTATGGAAACAAATATCCATTTCTTCTTGCCATTGTTTTATCAGAGGAGGCAACAGATGAGGAGGCCTTGTCGTTGGATGACGCAGCCAACCTTGATGACGACATTGTCGACTTGAGGGACGAGGAAATAGAAACACAGCAACAGCCCAAGGCTCTCTCCGATCTTGTGATTCTTGTTGAAGTGATCAATCACTTCCGCCTCCGCCTCCGCCTCCACTTCCATTAA 3111 0.4497 MDVEPRDGFSLTTPLVFDGGCEHGENKNGKDEDVETQRCEPNAATATFFKTCFNGLNALSGVGILSVPYALSLGGWLSLMLLFIIALATCFTGLLMRRCMDVDSHIRTYPDIGERAFGYKGRIIVSMFMYLELYLVATGFLILEGDNLHNLFPNMGFDLGGIRIGGRQGFVIIVALIILPSMWLHDLSMLSYISASGVLASIVVIGSILWVGAVDGVGFHGNGRLSNLNGIPNAVSLYAFCYCAHPVFPTLYTSMKDKRQFSKVMLVSFLLCTISYASMAVLGYLMYGDNVKSQVTLNLPTDKISSKIAIYTTLVNPVTKYALMISPYLPCPPHDAYRASHGIFNTTMAASTPPLNPLSSPKSKTNSPKETRPSPSPLSLLPKCNSLRELKQIQAATVKSNLQHDISVLTKLINFCTLNPSTTMDHAQHLFDQIPQPDIVLFNSMARGYARTNTPVRALSLFSHILNLGLQPDDYTFPSLLKACANSKALEEGKQVHCLAIKLGLHHNIYVHPTLINMYTECGDIRAARRVFNKILNPCVVTYNAIITGYARTSQPNEALALFRELQASNAKPTDVTMLSILSSCALLGALDLGKWIHEYIKKNEFDEYLKVNTALIDMYAKCGSLEDAACVFENMHSRDTQAWSAMIVAYAIHGHGNKAISMFEEMKTARVRPDEITFLGILYACSHTGMVDEGCSYFYSMRDRYGIVPGIKHYGCMVDLLGRAGRLDEAYKFIEGLPIKPTPILWRTLLSASSSHGNVELGKRVIEHIFELDVSHDVCSESFEGFGVLDEVGVGLEPGKETVLSDNREGVEELMKVKKPKRCREEKNVSWNELSRGTISRFFYMPISQAAKELNVGLTLLKRRCRELGIPRWPHRKLMSLQTLIKNIQELAREEGDSKVRDEAVGMLEQERKLMEEMPGIELEEKTKKLRQACFKANYKKRKVMGRDDGIAVFVPYRPFVYGNKYPFLLAIVLSEEATDEEALSLDDAANLDDDIVDLRDEEIETQQQPKALSDLVILVEVINHFRLRLRLHFH* 1037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl11g00764 1036 Coils Coil 990 1010 - -
Eupl11g00764 1036 Gene3D Tetratricopeptide repeat domain 376 473 IPR011990 GO:0005515
Eupl11g00764 1036 Gene3D Tetratricopeptide repeat domain 613 786 IPR011990 GO:0005515
Eupl11g00764 1036 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 438 472 IPR002885 -
Eupl11g00764 1036 Pfam PPR repeat family 437 486 IPR002885 -
Eupl11g00764 1036 Pfam PPR repeat family 538 585 IPR002885 -
Eupl11g00764 1036 Pfam PPR repeat family 640 686 IPR002885 -
Eupl11g00764 1036 Pfam Transmembrane amino acid transporter protein 45 327 IPR013057 -
Eupl11g00764 1036 Pfam RWP-RK domain 835 882 IPR003035 -
Eupl11g00764 1036 Gene3D Tetratricopeptide repeat domain 488 612 IPR011990 GO:0005515
Eupl11g00764 1036 NCBIfam pentatricopeptide repeat 678 711 IPR002885 -
Eupl11g00764 1036 NCBIfam pentatricopeptide repeat 643 676 IPR002885 -
Eupl11g00764 1036 NCBIfam pentatricopeptide repeat 614 640 IPR002885 -
Eupl11g00764 1036 NCBIfam pentatricopeptide repeat 541 574 IPR002885 -
Eupl11g00764 1036 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 611 780 - -
Eupl11g00764 1036 Pfam PPR repeat 614 639 IPR002885 -
Eupl11g00764 1036 Pfam PPR repeat 715 735 IPR002885 -
Eupl11g00764 1036 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 540 777 IPR046960 GO:0003723|GO:0009451
Eupl11g00764 1036 FunFam Pentatricopeptide repeat-containing protein chloroplastic 451 604 - -
Eupl11g00764 1036 ProSiteProfiles RWP-RK domain profile. 816 903 IPR003035 -
Eupl11g00764 1036 MobiDBLite consensus disorder prediction 351 380 - -
Eupl11g00764 1036 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 539 573 IPR002885 -
Eupl11g00764 1036 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 640 674 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl11g00764 Eupl-Chr11 9843561 9859439 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl11g00764 30 327 Amino Acid or Auxin Permease AAAP Family AT3G28960 63.758 3.60e-128 393
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Eupl11g00764 Aa_trans 2.7e-47 CL0062
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl11g00764 - - nnu:104598122 695.656