Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl11g00760 ATGGGCGATCATTTGGTTTTGCATGTCGACTCTCTCGTAACACCTGCGGCCTTACAATCCATGGAAGGCGCTGAGGCTTCAGAACCTTCTGGAGAAGGCTCTTGTGCCCACACTACAGCTCCGTCCAGTTCTACCAGCAGTGATAAGAGAGTGGAGGAACATGAAGTCCCTGAAGAAGAAGAGCCACTTATTCAGAACGTTGAATGCCGAATTTGCCAGGAAGAGGACCACATCAAAAACCTGGAGACCCCTTGCGCTTGTAGTGGCAGTTTGAAGTTCGCTCACAGGAAGTGCGTTCAGCGATGGTGCGATGAGAAAGGAGATATAACTTGTGAGATATGCCATCAGCCTTACCAGCCTGGTTATACTGCTCCACCTCCTCCACCACTCTCTGAGGATACCACCATCGATATCAGTGGTGGTTGGACGATCTCTGGGACTCCTTTGGATTTGCATGACCCTCGACTCTTGGCAATGGCAGCGGCAGAACACCATTTCCTGGAGGCTGAATATGACGAGTATGGAGCTACGAATGCCAGTGGAGCCGCTTTTTGCCGCTCTGCTGCTCTGATTTTAATGGCGCTCTTGCTGTTGAGGCACGCATTGACCATTACCAATGCTGATGGTGATGATGATGACGACGCTTCCACTTTTTTCTCTCTTTTCTTGCTTCGGGCTGCTGGGTTTCTTTTGCCATGCTACATTATGGCCTGGGCGATCAGTATCTTGCAGCGTCGAAGACAAAGACAGGAAGCAGCAGCGCTAGCAGCTACGGAAGTTGCATTTGTGCTACAGGCGGGGCAACGACGAGGTCTTCAATTCACCATAGCACCGGGACCTGCAGCAACTCCCCATCAGGAGCCTCTTCAATGA 873 0.512 MGDHLVLHVDSLVTPAALQSMEGAEASEPSGEGSCAHTTAPSSSTSSDKRVEEHEVPEEEEPLIQNVECRICQEEDHIKNLETPCACSGSLKFAHRKCVQRWCDEKGDITCEICHQPYQPGYTAPPPPPLSEDTTIDISGGWTISGTPLDLHDPRLLAMAAAEHHFLEAEYDEYGATNASGAAFCRSAALILMALLLLRHALTITNADGDDDDDASTFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATEVAFVLQAGQRRGLQFTIAPGPAATPHQEPLQ* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl11g00760 290 MobiDBLite consensus disorder prediction 18 62 - -
Eupl11g00760 290 MobiDBLite consensus disorder prediction 47 62 - -
Eupl11g00760 290 Pfam RING-variant domain 69 114 IPR011016 GO:0008270
Eupl11g00760 290 SUPERFAMILY RING/U-box 66 119 - -
Eupl11g00760 290 FunFam RING/FYVE/PHD zinc finger protein 57 125 - -
Eupl11g00760 290 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 250 IPR033275 -
Eupl11g00760 290 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 53 123 IPR013083 -
Eupl11g00760 290 SMART ringv_2 68 115 IPR011016 GO:0008270
Eupl11g00760 290 Pfam Protein of unknown function (DUF3675) 120 240 IPR022143 -
Eupl11g00760 290 ProSiteProfiles Zinc finger RING-CH-type profile. 61 121 IPR011016 GO:0008270
Eupl11g00760 290 CDD RING_CH-C4HC3_MARCH 69 115 - -
Eupl11g00760 290 MobiDBLite consensus disorder prediction 32 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl11g00760 Eupl-Chr11 9786394 9790887 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl11g00760 68 115 C3H Transcription Factor Family AT2G37950 43.137 1.29e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl11g00760 - - ming:122068802 433.335