Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl11g00730 ATGGCGGATCTTCAGAGGGGTTTTCCAGCTGAAAGGGATGTCGAGCAGGCCATTACAGCCCTTAAGAAAGGGGCATATCTACTAAAGTATGGGCGAAGAGGGAAGCCAAAGTTCTGCCCATTCAGGCTTGCTAATGATGAGTCTGTATTGATATGGTACTCTGGCAAAGAGGAGAAACAACTTAAACTAAGTCATATATCAAGGATTATACCTGGACAACGTACTGCAATATTTCAGCGGTATCCAAGGCCTGAGAAGGAATACCAATCCTTTTCTCTTATATACAATGATAGATCGTTGGATTTGATATGCAAGGATAAGGATGAAGCTGAAGTCTGGTTTGTTGGCCTAAAGGCATTGATTTCACGTGGTAACTACCGCAAGTGGAGAACTGAATCAAAAAGTGATAGACTTTCATCAGATAGTCCAAGTACCCATACTCGAAGAAATTCTCCATCGACTTCACCGTGTGGCAGTAGCAATACCTTCCATAAGGATCCTGGAGACACCCAACAAATTCAGCTTCCTTATGAGAGTCCTCCACAGAATGTTTTGATAAAGGCATTCTCTGATGTGATATTATATACTGCAGCAGCAAATGGTTCCCCTCAGTCAGAGTCAGTTGCAGATTCTCTCAATTCATTTTCATCTGGGGGTGTAGATAATTCAAATGGCCGAGGCTCCGCATTTGATACTTTTCGAGTTAGTTTGTCAAGTGCAGTTAGCTCATCAAGCCAGGGATCTTATCATGAAGATTTTGATGCTTTAGGTGATGTTTTTATCTGGGGAGAAGGCATTGGTGATGGAGTGCTGGGTGGTGGTATGCAAAGGGTTGGAAGTTCATCTGCTGCCAAGATAGATGCACTTCTGCCAAAGGCACTGGAATCAACAGTGGTGCTTGATGTCCACAATATTGCTTTTGGTGGCAGGCATGCTGTGTTAGTGACCAAACAAGGGGAGATCTTTAGCTGGGGTGAAGAGTGTGGAGGTAGGCTTGGGCATGGATTAGAAGCTGATGTTTCCCACCCGAAGCTCATCGACACTCTCAGTGGCATGAACATTGAACTAGTAGCATGTGGAGAGTATCATACATGTGCTGTTACAATGTCTGGGGATCTTTACTCGTGGGGTGATGGTACTCACAACACTGGTCTTCTTGGGCATAGGAGTAAGGTCAGTCACTGGATCCCTAAAAAAGTTAGTGGCCAAATGGAAGGAATACACGTTTCATCAATCTCTTGTGGTCCTTGGCATACAGCTGCTGTAACTTCTGCAGGCCAATTGTTTACATTTGGTGACGGTACTTTTGGTGCCCTTGGCCATGGTGATCGCAGTAGCACTAGCATACCAAGGGAAGTGGAATCTTTGAATGGACTACGAACAGTGAAAGTAGCTTGTGGTGTTTGGCACACTGCTGCAGTTGTAGAAGTTGTGGCTGAGTCTTCTAGTTCTGGTAACTCTTCATCTGGAAAGCTGTTCACCTGGGGAGATGGAGATAAAGGCCGACTTGGACATGGTGATAAAGAACCTAGACTAGTTCCAGCATGTGTAACTGCTTTGATGGATGTAAGCCTTTGTCAAGTAGCATGTGGGCATAATATCACAGTTGCTCTTACAACCTCAGGACGAGTATATACAATGGGGAGTAATTCTTACGGACAGTTGGGGAGTCCTAAAGCTGATGGAAAGCTCCCCACTTGCATTGAAGGTAAAATCAGCAATAGTTTTGTGGAAGAGATAGCATGCGGTTCTTATCATGTTGCAGTTTTGACTTCAAAAACTGAGGTCTACACTTGGGGAAAGGGGTCAAATGGCCAATTAGGCCATGGACACAATGATGACAGAAATACTCCAACCCTTGTTGAAGCTTTGAAGGATAAACAAGTTAAGAGTGTAGTGTGTGGTTCAAATTTCACTGCTGTGATTTGTCTTCATAAGTGGGTGTCTACTGCTGATAACTCCACATGCTCTGGTTGTCGTAATCCATTTGGTTTCAGGAGAAAACGTCATAATTGTTATAACTGCGGGCTAGTCTTTTGCAAAGCATGCAGCAGTAGGAAATCTCTAAAAGCTTCTCTGGCTCCAAATATTAACAAGCCTTATCGTGTGTGTGATGATTGCTTTACTAAACTTAAGAAGGTCATGGAATCTGGATCAACTTCCCGATTTCCTAAAAATCGTACTGGAAGTACACAACTGAATTCCAATGAAGTGGCAGAAAAAGAGACTCTTGATCCTAGATCACATGGGCAACTCTCCAGGCTCTCTTCAGTTGAATCAGTCAAGCAGGCTACAAGCAGACTATCCAAGCGCAACGGAAAACTAGAATCAAATAATAGCCATTTCTCTCCCATTCAGAATGGAAATTCTCAATGGGGAATCTTCTACTCATCAAAATCAACTTCCTTATTTGAATCTTCAAAGAAATTATTTTCTGCTTCTGTACCTGGTTCAAGAATGGTTTCTCGGGCAACATCTCCTGTCTCAAGAAAGCCTAGTCCACCTCGTTCTGCAATACTAACACCAACTCTTACTGTTCTTAAGTCTCCAGAAGTCATGGTTGATGATTCAAAGCACACGAATGACAACCTGAGTCAAGAAATCATTAAATTGAGGGCGCAGGTAGATGATCTTACCTGCAAATCCAAACTCCTAGAAGCTGAGCTGGAAAGAACATCAAGGCAATTGAAGGAGGCCACTGCAACAGCAGGGGATGAAGCAGCAAAATGCAAGGCTGCAAAGGAAGTAATTAAATCTCTTACTGCGCAGTTGAAGAATATGGCTGATAGGGTACCGGAAGCCAGCAGTAAATCAGGTCCAATCGCTGGACATGTCTCCAATAGTCTGAGCCTGGTTTCTACTGAGAACCAGTTGGGCAGCCTAACCTCTCTTGAGCCCAAGTCCAATAGCCACTCAGCAAATCCACTCTCATGCAACGGAACCAAGGCTCAAACTGAACATGCAGAGTGGGTAGTGCAAGATGAACCAGGCGTGTACATAACTCTTTCCTCCTTTCCAGGGGGTGCCAAAGATCTCAGGAGGGTACGCTTCAGTCGGAAACTTTTCACTGAGAAACAAGCAGCAAAGTGGTGGGCTGAAAACAAGGCAAAGGTATATGAGCGGCACAACATCCGGAGTGCAGAGAAATCCATCTCTGGTGCTCTTTCAGTGCCACTGGACGAGAAGGATGGCAGCCTTATCGACTGA 3207 0.4428 MADLQRGFPAERDVEQAITALKKGAYLLKYGRRGKPKFCPFRLANDESVLIWYSGKEEKQLKLSHISRIIPGQRTAIFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWFVGLKALISRGNYRKWRTESKSDRLSSDSPSTHTRRNSPSTSPCGSSNTFHKDPGDTQQIQLPYESPPQNVLIKAFSDVILYTAAANGSPQSESVADSLNSFSSGGVDNSNGRGSAFDTFRVSLSSAVSSSSQGSYHEDFDALGDVFIWGEGIGDGVLGGGMQRVGSSSAAKIDALLPKALESTVVLDVHNIAFGGRHAVLVTKQGEIFSWGEECGGRLGHGLEADVSHPKLIDTLSGMNIELVACGEYHTCAVTMSGDLYSWGDGTHNTGLLGHRSKVSHWIPKKVSGQMEGIHVSSISCGPWHTAAVTSAGQLFTFGDGTFGALGHGDRSSTSIPREVESLNGLRTVKVACGVWHTAAVVEVVAESSSSGNSSSGKLFTWGDGDKGRLGHGDKEPRLVPACVTALMDVSLCQVACGHNITVALTTSGRVYTMGSNSYGQLGSPKADGKLPTCIEGKISNSFVEEIACGSYHVAVLTSKTEVYTWGKGSNGQLGHGHNDDRNTPTLVEALKDKQVKSVVCGSNFTAVICLHKWVSTADNSTCSGCRNPFGFRRKRHNCYNCGLVFCKACSSRKSLKASLAPNINKPYRVCDDCFTKLKKVMESGSTSRFPKNRTGSTQLNSNEVAEKETLDPRSHGQLSRLSSVESVKQATSRLSKRNGKLESNNSHFSPIQNGNSQWGIFYSSKSTSLFESSKKLFSASVPGSRMVSRATSPVSRKPSPPRSAILTPTLTVLKSPEVMVDDSKHTNDNLSQEIIKLRAQVDDLTCKSKLLEAELERTSRQLKEATATAGDEAAKCKAAKEVIKSLTAQLKNMADRVPEASSKSGPIAGHVSNSLSLVSTENQLGSLTSLEPKSNSHSANPLSCNGTKAQTEHAEWVVQDEPGVYITLSSFPGGAKDLRRVRFSRKLFTEKQAAKWWAENKAKVYERHNIRSAEKSISGALSVPLDEKDGSLID* 1069
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl11g00730 1068 Gene3D - 483 659 IPR009091 -
Eupl11g00730 1068 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 490 541 IPR000408 -
Eupl11g00730 1068 MobiDBLite consensus disorder prediction 719 739 - -
Eupl11g00730 1068 Gene3D - 13 128 IPR011993 -
Eupl11g00730 1068 FunFam PH, RCC1 and FYVE domains-containing protein 1 228 478 - -
Eupl11g00730 1068 Coils Coil 910 930 - -
Eupl11g00730 1068 MobiDBLite consensus disorder prediction 719 783 - -
Eupl11g00730 1068 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 594 645 IPR000408 -
Eupl11g00730 1068 SMART fyve_4 644 713 IPR000306 GO:0046872
Eupl11g00730 1068 Pfam Transcription factor regulating root and shoot growth via Pin3 988 1042 IPR013591 -
Eupl11g00730 1068 CDD PH_PLC_plant-like 12 122 - -
Eupl11g00730 1068 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 412 422 IPR000408 -
Eupl11g00730 1068 SUPERFAMILY FYVE/PHD zinc finger 646 719 IPR011011 -
Eupl11g00730 1068 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 660 718 IPR013083 -
Eupl11g00730 1068 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 542 593 IPR000408 -
Eupl11g00730 1068 PRINTS Chromosome condensation regulator RCC1 signature 371 387 IPR000408 -
Eupl11g00730 1068 PRINTS Chromosome condensation regulator RCC1 signature 302 315 IPR000408 -
Eupl11g00730 1068 PRINTS Chromosome condensation regulator RCC1 signature 321 337 IPR000408 -
Eupl11g00730 1068 PRINTS Chromosome condensation regulator RCC1 signature 412 428 IPR000408 -
Eupl11g00730 1068 PRINTS Chromosome condensation regulator RCC1 signature 589 610 IPR000408 -
Eupl11g00730 1068 PRINTS Chromosome condensation regulator RCC1 signature 428 442 IPR000408 -
Eupl11g00730 1068 PRINTS Chromosome condensation regulator RCC1 signature 531 549 IPR000408 -
Eupl11g00730 1068 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 319 370 IPR000408 -
Eupl11g00730 1068 Pfam Transcription factor BRX N-terminal domain 905 940 IPR027988 -
Eupl11g00730 1068 FunFam PH, RCC1 and FYVE domains-containing protein 1 479 651 - -
Eupl11g00730 1068 Coils Coil 854 902 - -
Eupl11g00730 1068 ProSiteProfiles BRX domain profile. 988 1043 IPR013591 -
Eupl11g00730 1068 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 650 712 IPR017455 -
Eupl11g00730 1068 MobiDBLite consensus disorder prediction 144 176 - -
Eupl11g00730 1068 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 57 926 - -
Eupl11g00730 1068 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 257 318 IPR000408 -
Eupl11g00730 1068 Gene3D - 382 482 IPR009091 -
Eupl11g00730 1068 Gene3D - 212 381 IPR009091 -
Eupl11g00730 1068 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 426 477 IPR000408 -
Eupl11g00730 1068 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 371 425 IPR000408 -
Eupl11g00730 1068 Pfam FYVE zinc finger 646 712 IPR000306 GO:0046872
Eupl11g00730 1068 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 464 474 IPR000408 -
Eupl11g00730 1068 MobiDBLite consensus disorder prediction 132 176 - -
Eupl11g00730 1068 SUPERFAMILY PH domain-like 13 121 - -
Eupl11g00730 1068 Pfam Regulator of chromosome condensation (RCC1) repeat 489 538 IPR000408 -
Eupl11g00730 1068 Pfam Regulator of chromosome condensation (RCC1) repeat 319 367 IPR000408 -
Eupl11g00730 1068 Pfam Regulator of chromosome condensation (RCC1) repeat 595 642 IPR000408 -
Eupl11g00730 1068 Pfam Regulator of chromosome condensation (RCC1) repeat 426 474 IPR000408 -
Eupl11g00730 1068 Pfam Regulator of chromosome condensation (RCC1) repeat 370 422 IPR000408 -
Eupl11g00730 1068 Pfam Regulator of chromosome condensation (RCC1) repeat 541 590 IPR000408 -
Eupl11g00730 1068 MobiDBLite consensus disorder prediction 749 783 - -
Eupl11g00730 1068 CDD FYVE_like_SF 655 708 - -
Eupl11g00730 1068 SUPERFAMILY RCC1/BLIP-II 256 647 IPR009091 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl11g00730 Eupl-Chr11 9370403 9398315 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl11g00730 914 1068 Major Intrinsic Protein MIP AT1G31880 30.890 5.59e-17 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl11g00730 - - msin:131242128 1567.75