Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl11g00672 ATGCTTCAACAAGCTAAGGTGCGCAGGAGGAGCACACTTCCTTTACGTGCGCACATGGGATTGGGGATTTATCCGTACACAGAGGAGACAAGAAGCAGAAGAACAAGGACACGAACAAGACGAAGAACAACGTCAACGACGAGAATGGAATCGCGACTGGGTTTGATCGACCAGTCGTTTAACACTCGATACTCATCTTGGGTTCGAGAAGCTCTTGACGAGCTACCAGATAATTTTACGATCACCGATCCTTGCATTTCTGGCCATCCGATCGTCTTTGCTAGTCAGGGATTCCTTAAAATGTCTGGGTACTCAAAAGAGGAGGTGATTGGGAAGAATGGGAGGATATTTCAGGGACGGGGGACTGATCGGAGGTCGGTAATGGAGATTCGGGAGGCGATTCGAGAGGAACGGACAGTTCAGATGAGTTTGTTGAATTATCGGAAAGACGGGACTCCGTTGTGGATGTTGTTTCACTTGAGTCCAGTTTTCAGTAAGGAGGACGGCAGGGTTATTCATTTCGTCGCAGTTCAGGTGCCAATATCACGAAAATTGACTTCTTCTGGAACTGGGTTTGGGAGGAATGGAGATTATTTGAATGCGGGTAGGACTAGATCGCGGGAAATTGTGTTTGGGTCGTGTCGGAGGGAGGTGTGCACTGATACTGTGGCGGAATTGGGGCAAGTTAGGGCCCTGGAATCGTTCATGAATTCGGATAATAGAGGATTGGAGGCTGAAGAGTCATGTGAGGCAAGTGACCTGGAGAAACACAAAGCTGTCACAGCCATTAACGACATTTTATCTGTGCTGACTCACTATTGCGAGCCAACGGGCAGTTTGGTCTGTGGGAAGAGATGCAGCTCAGCAGGGCTGGCCCCCCTTGGTTCATCCTTAAATATATCTCTTGGTAGAATCAAACAGAGCTTTGTATTAACCAATCCTCACTTACATGGCATGCCCATTGTTTACGCAAGTGATGCCTTCCTAAATTTGACAGGCTACATTCGAAATGAAGTGTTGGGCCGGAATTGTAGATTTTTAAATGGATCTGACACAGATACCAAGGCTATATGCCAGATAAGGGAAAGCATCCAAAGTGAGCAAGCCTGTTCAGTGCGTATCTTAAACTATAGGAAGGACGGAAGCTCATTCTGGAATCTTCTTCATATATCACCTGTTCGGAATGCTACCGGCAGGGTAATGTTACATATAGCATTTTACGTTGGTGTTCAGATAGAAGAAGGTTGTAAGAATGAGGTATGCCAAGGGTTGAGCCCCGAAATGAGGCAACGTGGTGCCGTGGGTGCTGTCAAGGTCGCAATAAGGAGCTTATCGATGAGCGCTGGGCCCTCCAAGTCATAG 1362 0.4728 MLQQAKVRRRSTLPLRAHMGLGIYPYTEETRSRRTRTRTRRRTTSTTRMESRLGLIDQSFNTRYSSWVREALDELPDNFTITDPCISGHPIVFASQGFLKMSGYSKEEVIGKNGRIFQGRGTDRRSVMEIREAIREERTVQMSLLNYRKDGTPLWMLFHLSPVFSKEDGRVIHFVAVQVPISRKLTSSGTGFGRNGDYLNAGRTRSREIVFGSCRREVCTDTVAELGQVRALESFMNSDNRGLEAEESCEASDLEKHKAVTAINDILSVLTHYCEPTGSLVCGKRCSSAGLAPLGSSLNISLGRIKQSFVLTNPHLHGMPIVYASDAFLNLTGYIRNEVLGRNCRFLNGSDTDTKAICQIRESIQSEQACSVRILNYRKDGSSFWNLLHISPVRNATGRVMLHIAFYVGVQIEEGCKNEVCQGLSPEMRQRGAVGAVKVAIRSLSMSAGPSKS* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl11g00672 453 ProSiteProfiles PAC domain profile. 368 422 IPR000700 -
Eupl11g00672 453 SUPERFAMILY PYP-like sensor domain (PAS domain) 76 178 IPR035965 -
Eupl11g00672 453 ProSiteProfiles PAS repeat profile. 64 113 IPR000014 -
Eupl11g00672 453 Pfam PAS domain 88 182 IPR000014 -
Eupl11g00672 453 Pfam PAS domain 308 406 IPR000014 -
Eupl11g00672 453 SMART pas_2 296 369 IPR000014 -
Eupl11g00672 453 SMART pas_2 66 139 IPR000014 -
Eupl11g00672 453 SMART pac_2 141 184 IPR001610 -
Eupl11g00672 453 SMART pac_2 371 412 IPR001610 -
Eupl11g00672 453 Gene3D PAS domain 65 188 - -
Eupl11g00672 453 Gene3D PAS domain 308 446 - -
Eupl11g00672 453 PANTHER PROTEIN TWIN LOV 1 54 442 - -
Eupl11g00672 453 NCBIfam PAS domain S-box protein 90 177 IPR000014 -
Eupl11g00672 453 NCBIfam PAS domain S-box protein 321 404 IPR000014 -
Eupl11g00672 453 CDD PAS 75 181 IPR000014 -
Eupl11g00672 453 MobiDBLite consensus disorder prediction 28 49 - -
Eupl11g00672 453 ProSiteProfiles PAS repeat profile. 321 343 IPR000014 -
Eupl11g00672 453 SUPERFAMILY PYP-like sensor domain (PAS domain) 318 406 IPR035965 -
Eupl11g00672 453 CDD PAS 321 407 IPR000014 -
Eupl11g00672 453 FunFam Protein TWIN LOV 1 isoform D 78 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl11g00672 Eupl-Chr11 8648507 8656153 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl11g00672 63 413 AGC Kinase Gene Family AT5G58140 30.909 6.59e-56 197