Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl11g00647 ATGGGTGGTGGCGATTCTCCAAAATGTGCCTTGGAGAAGGTGGTGGTTGGCCCCCTTGCCGGTTTCCGAATTGTCGACGCTCCGATTCTTCTCCTTGTTTCCTTCCACAAGGCTTTGCGCTCCGAGTTGGCCGAGCTCCACCGCCTCACTTCGTCGTCGTTGGAGATTGGGTACCCCGGGCGCGACCTGATCCTCGACCTCCTCCGACGGTTCCGTTTCCTTAAACTCGCTTACAAGTATCACTGCGCTGCCGAGGATGAGGTGATCTTTCGAGCACTGGACCTACGTGTCAGAAATGTTGTTAGCACATATTCTCTTGAACATGCAGGCATAGATGACTTATTCGACTCTGTTTTTCATTGCTTGAATGTTTTGTTGGAGGATGGAAATCTTTCCAAACCATTTCAAGAACTTGTTTTTTGTACTGGCACTATTCAGACATCAATTTGCCAGCATATGCTCAAAGAAGAAGAGCAGGTTTTCCCTTTGCTGATGCAGCGGTTTTCTTTCAAAGAGCAGGCTTCACTTGTTTGGCAGTTCATGTGTAGTGTACCTATAATGTTGTTGGAGGATTTTCTGCCATGGATGACATCCTATCTTTCTACAGATGAACAAGCTGATGTTACGCATTGTATTAAAGATGTTGTTCCTAATGAAAAGCTATTGCAAGAGGTGGTGATGTCCTGGCTTGGTAAGAAGAGCCAACCTTTTTTCAGAGCTTTCAATGCCAGAGAGAATGAAGTATCTTCACGTTCTGATGAGCCATTATACTTGAAGGAGTTGCCAAAAATAAATTCGTCTACAAAGAGGTTATCTGGGGGAAATTGCGGTCGAGGAGAATTAGATTGCCTTAAAAATAATGCTAAACGTCATCCTGTTGATGGTTTTCGTCTTTGGCATGGTGCCATCAGGAAAGATTTGCAAGAAATTCTGGAGGAGCTACATGAAATGAGAAGCTCTATGATTTTTTCAACTTTAGCTTCAGTCAGTGGCCAGCTAAAGTTCCTTGCAGATGTCCTCATTTTCTATAGTGATGCCTTGGAGAAAGTCTTCTTCTCAGTGTTAAATCAACTTGCCAATGGCTGCTTATCTTTCTCCCATCAACGGTTCCTGGATGACAGTCAAATTGAAGGTCTCTTACGTGTGCTACAAAATGTTGACACTCAAAATGAAACATCTGTGTGCAAGCCTGTGGAGAAGCTATGCTGGCAATTGGAATCTTTCATAGTGGCGATTAACAAACACTTTGCTTTTCAAGAATCAGAGGTTTTCCCTCTCATTCGCAAGAACTGCAACCATGAAATGCAGCAGAGGTTGTTATACACGAGCCTTCATATGATGCCTCTTGGGTTACTAAAATGTGTGATAACTTGGCTTTCGACACATTTAACTGAGGATGAATCGAAGGATTTTCTTTGTAGCATAAATCTGGAAGGATCTATAGTTGACATGTCTTTTGCGTCTCTCTTGCATGAGTGGGTCTGCCTTGGGTATTCAGGTAAAACTTCCATCGAGAAATTCAGAAAAGAGTTGGAGGAAATGTTCAAGAACAGAAGTTCCTTCCTAGCTGAACAAATCGAGAACACTGGATTTTCTTTAGATTTAGATGTGCGTCCTTGCAAAAGATCTCACCCTGGTCAAGTGAAGCCGAACTGTACTGATAAGGCCAAGAACAGTGCTTCAGATTCTTCATATTTTAACCCCCATGATGCTGAAGAGAAGTACAGCACATTGTACTCTAGTAGAATGAATCTGCAGATATTTTTCCCTGGGGCTTTAAAGAAAATATCTCCTTTCTCCAAGTTTCCTACTGAGAAGGGTGATGCTGGTTCTAGTCTCAATCTGGAACCGAAACCAATTGACCACATCTTTCTCTTCCACAAGGCCCTGAAGAATGATCTAGATTACCTGGTTCTTGGATCAGCTAAGATGGCTGAGAATGTTGGGTTCTTCATGGAATTCTGTCGGCGCTTTCACCTCGTACGGATTCTGTATCAAATCCATAGTGACACTGAAGATGAAATCGCGTTCCCAGCTTTGGAGGCGAAGGGGCAATTCAAAAACATTAGCCACTCCTACAGTATTGACCACAAATTGGACAAGGAGCACTTCAATAATATCTCCACTATTCTAGATAAAATATCTGAATTGCGTGTTGCTCTTCCTTCTGAAATGTCTAGTGTTGTGGATGCGGCTACACTGGATCAGAGAATGCTGAAATACCGTCAGCTGTGTATGAAGCTCCACGGCATGTGTAAAACAATGTGTATCACGCTGGGGAAGCATGTTCATCGTGAAGAAATTGAACTTTGGCCTTTATTTGCAGAATGCTTCTCCAATGAGGAGCAAGAAAAGATCATAGGATGCATACTTGGAAGGACAAGAGCTGAAATTCTACAAGAAATGATACCCTGGCTTATGGCATCCTTAACACCTGGGGAACACCAAGCAATAATGTCATTATGGCGCAAGACAACAAAAAATACGATGTTTGATGAATGGTTAGGGGAATGGTGGGAAGGTATGAACAGGCATGATATAGCTGCAGTGATAGAGGAGTCGAATATCCTTCCTTCTGGGACAGCAGATCCATTGGAAATTGTTGCTACCTATCTGTCTAAAGAAGGTTTTGATGAGACAGGAAGGACCCTTCACGATAAAGGATTGACGTTTCCACAGAGAGTTTCTGTTGGTGCTAATTTTGAACCTTCCGGAAAGGACAATGGAGAAGATAAAACAAAGATTCTGCATGGGAACATGGATAGTTACCAACGTTCAGAATGCACAAAACTTTGTGGTGAGGATGACAAACAGAGATGCCAGAAAGTAATAGATGTCAAAGATCGGGTTGAGAAACCAGATGAACTTTTACATGTTAATCAGAAATTTAGACATTGCGAGGAGCACTTTTTGACGATGAGTCAAGAAGATCTGGAGGCTGCAGTAAGAAGAGTATCACGTGACACTACTTTAGATCTCCAGAAAAAGTCATATATTATCCAGAACCTGCTGATGAGCCGTTGGATTGTTACCCAGCAGAAGCCTCATCAAGGGTTAACTTTCTCAAGCAATGATGGAGATATTCCTGGTCAGTGTCCATCTTATCGGGACGCAGTCGAAACAACTTTTGGTTGTAAACACTACAAGAGAAACTGTAAGCTCTTTGCTGCTTGTTGCAAGAAGTTTTTTACGTGTAGATATTGCCATGATGATGTGGCTGATCATTTAATGGACAGGAAATCTACTACCAAGATGATGTGCATGAAATGTTTGAAAGTTCAACCTATTGGTCCCATATGCTCTAGCATCTCTTGTAACGGTTTCTCCATGGCAAGATACTTCTGCAGCATCTGCAAGTTGTACGACGATGAAAGGGAAATCTACCACTGCCCTTTCTGCAATCTATGCCGAGTTGGGAAGGGGTTGGGGATTGAATACTTTCATTGCATGAATTGCAATGCATGTATGTCAAAATCCCTTGCAGTGCATATCTGCATAGAAAAATGTTTCGAGTCAAACTGTCCGATTTGCCACGATTACATCTTCACGTCAAGCTCTCCGGTGAAGGCCCTTCCATGTGGGCATTTGATGCACTCAACATGTTTTCAGGACTACACTTGTACTCAGTATACGTGCCCAATTTGTAGCAAGTCACTGGGGGACATGCAGGTTTATTTTGGGATGCTGGATGCCTTGTTGGCTGAAGAGAAAGTTCCAGAGGAGTACTCTGGCCAGACGCAGGTAATATTGTGCAATGATTGTGGGAAGAGAGGGGTCACATCTTTCCATTGGCTTTACCACAAGTGTCCTCACTGTGGTTCTTACAACACCCGGCTTCTTTGA 3843 0.4291 MGGGDSPKCALEKVVVGPLAGFRIVDAPILLLVSFHKALRSELAELHRLTSSSLEIGYPGRDLILDLLRRFRFLKLAYKYHCAAEDEVIFRALDLRVRNVVSTYSLEHAGIDDLFDSVFHCLNVLLEDGNLSKPFQELVFCTGTIQTSICQHMLKEEEQVFPLLMQRFSFKEQASLVWQFMCSVPIMLLEDFLPWMTSYLSTDEQADVTHCIKDVVPNEKLLQEVVMSWLGKKSQPFFRAFNARENEVSSRSDEPLYLKELPKINSSTKRLSGGNCGRGELDCLKNNAKRHPVDGFRLWHGAIRKDLQEILEELHEMRSSMIFSTLASVSGQLKFLADVLIFYSDALEKVFFSVLNQLANGCLSFSHQRFLDDSQIEGLLRVLQNVDTQNETSVCKPVEKLCWQLESFIVAINKHFAFQESEVFPLIRKNCNHEMQQRLLYTSLHMMPLGLLKCVITWLSTHLTEDESKDFLCSINLEGSIVDMSFASLLHEWVCLGYSGKTSIEKFRKELEEMFKNRSSFLAEQIENTGFSLDLDVRPCKRSHPGQVKPNCTDKAKNSASDSSYFNPHDAEEKYSTLYSSRMNLQIFFPGALKKISPFSKFPTEKGDAGSSLNLEPKPIDHIFLFHKALKNDLDYLVLGSAKMAENVGFFMEFCRRFHLVRILYQIHSDTEDEIAFPALEAKGQFKNISHSYSIDHKLDKEHFNNISTILDKISELRVALPSEMSSVVDAATLDQRMLKYRQLCMKLHGMCKTMCITLGKHVHREEIELWPLFAECFSNEEQEKIIGCILGRTRAEILQEMIPWLMASLTPGEHQAIMSLWRKTTKNTMFDEWLGEWWEGMNRHDIAAVIEESNILPSGTADPLEIVATYLSKEGFDETGRTLHDKGLTFPQRVSVGANFEPSGKDNGEDKTKILHGNMDSYQRSECTKLCGEDDKQRCQKVIDVKDRVEKPDELLHVNQKFRHCEEHFLTMSQEDLEAAVRRVSRDTTLDLQKKSYIIQNLLMSRWIVTQQKPHQGLTFSSNDGDIPGQCPSYRDAVETTFGCKHYKRNCKLFAACCKKFFTCRYCHDDVADHLMDRKSTTKMMCMKCLKVQPIGPICSSISCNGFSMARYFCSICKLYDDEREIYHCPFCNLCRVGKGLGIEYFHCMNCNACMSKSLAVHICIEKCFESNCPICHDYIFTSSSPVKALPCGHLMHSTCFQDYTCTQYTCPICSKSLGDMQVYFGMLDALLAEEKVPEEYSGQTQVILCNDCGKRGVTSFHWLYHKCPHCGSYNTRLL* 1281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl11g00647 1280 CDD RING-H2_Pirh2-like 1173 1216 - -
Eupl11g00647 1280 CDD Hr-like 31 162 - -
Eupl11g00647 1280 Pfam CHY zinc finger 1045 1120 IPR008913 GO:0008270
Eupl11g00647 1280 SUPERFAMILY Zinc hairpin stack 1111 1166 IPR037275 -
Eupl11g00647 1280 Gene3D nmb1532 protein domain like 290 442 - -
Eupl11g00647 1280 Gene3D nmb1532 protein domain like 31 182 - -
Eupl11g00647 1280 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 663 1279 - -
Eupl11g00647 1280 FunFam Zinc finger protein-related isoform 1 1169 1218 - -
Eupl11g00647 1280 SUPERFAMILY RING/U-box 1173 1222 - -
Eupl11g00647 1280 Pfam Ring finger domain 1173 1215 IPR001841 -
Eupl11g00647 1280 Pfam Hemerythrin HHE cation binding domain 31 164 IPR012312 -
Eupl11g00647 1280 CDD Hr-like 621 772 - -
Eupl11g00647 1280 ProSiteProfiles Zinc finger RING-type profile. 1174 1216 IPR001841 -
Eupl11g00647 1280 SMART ring_2 1174 1215 IPR001841 -
Eupl11g00647 1280 Pfam Zinc-ribbon 1221 1278 IPR039512 -
Eupl11g00647 1280 ProSiteProfiles Zinc finger CTCHY-type profile. 1110 1173 IPR017921 -
Eupl11g00647 1280 Gene3D - 1245 1280 - -
Eupl11g00647 1280 Gene3D nmb1532 protein domain like 616 820 - -
Eupl11g00647 1280 ProSiteProfiles Zinc finger CHY-type profile. 1038 1107 IPR008913 GO:0008270
Eupl11g00647 1280 SUPERFAMILY CHY zinc finger-like 1036 1101 IPR037274 GO:0008270
Eupl11g00647 1280 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1167 1218 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl11g00647 Eupl-Chr11 8321058 8351230 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl11g00647 27 907 C2H2 Transcription Factor Family AT3G18290 35.446 2.22e-158 506
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl11g00647 K16276 - nnu:104608041 1744.94