Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl11g00617 ATGAAAAGGTCTAGAGACGACGTTTACATGGGCTCTCAACTCAAACGGCCCGTTGTTTCTTCCCGTGCTGAACCCTCTGGGCAACCCCAAACCCCTGGAGGTGGAGGAGGAGGAGGAGGAGTAGGGACACAGAAACTAACAACCAATGATGCCCTGGCCTATCTCAAGGCTGTAAAGGACATCTTTCAGGATAAAAGAGAGAAATACGACGAGTTCCTTGAGGTCATGAAAGATTTCAAGGCCCAGAGAATTGACACCACTGGTGTTATCTCGAGGGTGAAAGAATTATTTAAAGGGCATCGTGACCTTATTTTGGGTTTTAATACCTTCTTGCCCAAAGGATATGAGATCACACTCCCACTTGAGGATGAGCCTCCACCGAAGAAGCCTGTTGAATTTGAGGAAGCGATCAATTTTGTAAACAAAATAAAGACACGGTTCCAAAACGATGATCATGTATACAAATCATTCTTAGATATTTTGAATATGTATCGAAAGGAGAACAAGTCCATTACTGAAGTCTACCAAGAGGTTGCCACTCTTTTCAATCTCCATCCAGACTTGCTTGCGGAGTTCACACATTTCCTACCAGATAATTCAGCGACAGCCTCTACGCACCATGCTCCATCAGGCAGAAATTCGTCTTTTCCGCGTCGAGATGAGAGGAGCTCTGCTATGCCCACATTGCGACCAATGCACGGGGACAAGAGGGAGAAGACTATGACTTCCCATGCCGACCGTGATCTCAGCGTCGACCGTCCTGATCCAGATCATGATAAAGCATTGATGAGAATGGACAAGGAACAGCGGAAACGTGTCGAAAAGGAAAAGGAGAGAAAGGAAGACAGGGATAGAAGAGACCGTGATCGGGATGATAAGGATCTAGAGAACGACAGCAATAGGGACTTCAACAACATGCAGCGTCTTCCCCACAAACGTAAAGCTGCTCGGAGGGTTGAAGACACTGTTACTGACCAGTTACTCCAGGGTGGGGAAGGAGCTGAAAACTTTGGAATGCATCCCATTTCATCATCTGCTTATGATGATAAAAACACCTTGAAAAGTGTGTACAACCAAGAATTCACTTTTTGTGAGAAAGTCAAGGAGAAGTTACGCAACTCTGATGATTACCAGGAATTCTTGAAATGCCTTCATATTTATAGCACCGAAATTATTACAAGACCCGAATTGCAAAGCTTGATTGGTGATTTACTTGGAAAATATCCGGATCTTATGGATGGGTTCAATGAATTTTTGACGCGTTGTGAGAAGATTGATGGATTTCTTGCTGGCGTTATGAGTAAAAAATCCTTGTGGAGCGACGGACATTCACCCAGACCAATGAAAGCAGAGGACAGGGATAAAGAGCGGGAGCGTGAAAGGGATGAAAGGGACAAAGATAGAGACCGTGAAAGGGAGAGGGATAGAGAAAGGGAAAGAATTGACCGAAATGCAGCTCCAGCAGGTCACAAGGTTCTGTTTCCGAACAAGGATAAATATATGGCTAAACCGATTTCAGAGCTTGACCTCTCTAACTGTCAGCGCTGTACCCCCAGTTATCGACTTCTGCCAAAGAATTATCCAACACCTTCAGCAAGCCAGAGGTCAGAGCTTGGTGCTCAAGTTTTGAATGATTTCTGGGTATCAGTGACTTCAGGAAGTGAGGATTACTCTTTCAAACACATGCGTAAAAACCAATATGAAGAAAGCCTGTTTAGATGCGAAGATGATAGGTTTGAACTAGACATGTTATTAGAGTCCGTCAATGTAACCACAAAGCGCGTTGAGGAATTGTTGGACAAGATCAATGATAATACAATCAAACCAGACAGTCCAATTCGTATTGAAGACCATTTTACAGCTTTAAATCTAAGGTGCATTGAACGTTTATATGGTGATCACGGGCTGGATGTGATGGACGTATTACGCAAGAATGCAACTCTTGCATTGCCTGTTATATTAACTCGCTTGAAGCAGAAACAAGAAGAGTGGTCAAGGTGTCGTTCAGATTTTAATAAAGTTTGGGCTGAAATTTATGCTAAGAACTATCACAAATCACTTGACCATCGTAGCTTCTATTTCAAGCAACAGGATACAAAGAGCTTGAGCACAAAAGCTTTATTGGCCGAGATTAAAGAAATCAACGAGAAGAAGCGTAAGGAGGATGATGTTCTTCTTGCGATTGCTGCTGGAAACCGAAGACCTATAATTCCAAATATGGAATTTGAGTATTCTGATTCAGATATTCACGAAGACTTATATCAGCTCATTAAATATTCATGTGGGGAGGTTTGCACAAACACAGAACAGTTGGACAAAGTTATGAGGATTTGGACAACCTTCTTGGAGCCCATTCTGGGTGTTCCTCCTCGGCCGCAGGGTGCAGAGGACACTGAAGACGTTGTAAAGGCTAAGAGTCATGTTGTCAAAAGTTGTTTAGGAGAAAGTGATGGCAGTCCGGGTGTTGAAGTTGCCATTACTAATTCCAAGCAACTACCTGCCAGCAATGAAGATGACAAACCACCTGAAGAAGCAAGTTCTTCCAGAGCTAGGTTTGTAAATGGGGACACAGCTAGAGAAGATGGATTTCATGATGTAGATCAGGGTGCCCGTAGGAATGATAATTTCGGTACTACTACTCAGCATGGGAAAGTGCAGAATAGTATTTCCATGGCTGACGAAGTATCAGGAGTCAACATACAAGCTACTTCTAACGGAAGGCCAACTGAATTTAACCCCTCACTTGCTATTAGAGCCGAACAAAGTCATGGTAGGACCAACATGGAAATTACATCAGGGATTAGCACCACACCTTCCAGATCTAGTCATGCTGCCGTCGATGGTGGGCTTGAGCCAAGACTTAATAATGAAGCTTTACCTTCAGCAGAGGGCGGCGATAGTACGAAACCAGTTGTATCAGCAAATGGGGTGATGACAGAAGGCACCAAAGTTCACAGATTTCGTGAGGATCCTGTGGGGCACTTCAAAATTGAAAGAGAAGAGGGCGAGCTATCACCAAATGGGGATTTTGAAGAGGATAATTTTGCAGTCTATGGAGATGCTGGTATGGATGCTGTGCCTAAAGCAAAGGATAGTGCTGCAAGCAGGCAATATCAAGCCAGGCATGGAGAAGAAGAGGAAATATGTTGTGGGGAAGCAGGAGGAGAAAATGAAGCAGATGCTGATGACGAGGGCGGGGAGAGTGCACAAAGGTCAACAGAGGACAGTGAGAATGCTTCTGAGGCTGGTGAGGATGTTTCAGGGAGCGAGTCTGGCGATGGTGAGTGCTCCCGTGAAGATCACGAAGAAGAGGAAGATGTAGATCATGATGACCATGATGCTAAGGCTGAAAGTGAAGGTGAAGCTGAAGGGATGGCTGATGCACATGATGTTGAAGGAGACAGCATGTTATTGCCATTTTCAGAACGTTTCCTGCTCACAGTGAAGCCTCTTGCCAAACATGTCCCTTTGGCATTACAAGACAAAGAAAAGAAAGATTCTAGAATTTTTTATGGAAATGATTCGTTCTATGTGCTTTTTAGGCTTCATCAAACACTGTATGAGAGAATAATGTCAGCAAAGATGAATTCATCATCTGTTGAAAGGAAATGGAGAACTTCAAAGGATATGAGCCCATCTGACCTCTATGCCAGATTTATGAGTGCACTATACAATTTACTTGATGGGTCTGCTGACAATACAAAGTTTGAGGATGATTGCCGAGCTATTATTGGAACTCAGTCATATGTGCTATTCACATTGGACAAGTTGATATATAAACTTGTCAAACAGCTTCAAACGGTCTCAACTGATGAGATGGACAATAAACTTCTTCAACTATATACATATGAAAGATCAAGGCGACAAGGGAGATTCATTGATTTAGTTTATCACGAAAATGCCCGTGTTCTTCTTCATGATGAGAACATCTATCGATTCGAATGTTTATCTGGTCCAACCCTGCTTGTCTGTCCAGCTGATGGACAATGGGCATGA 3996 0.4339 MKRSRDDVYMGSQLKRPVVSSRAEPSGQPQTPGGGGGGGGVGTQKLTTNDALAYLKAVKDIFQDKREKYDEFLEVMKDFKAQRIDTTGVISRVKELFKGHRDLILGFNTFLPKGYEITLPLEDEPPPKKPVEFEEAINFVNKIKTRFQNDDHVYKSFLDILNMYRKENKSITEVYQEVATLFNLHPDLLAEFTHFLPDNSATASTHHAPSGRNSSFPRRDERSSAMPTLRPMHGDKREKTMTSHADRDLSVDRPDPDHDKALMRMDKEQRKRVEKEKERKEDRDRRDRDRDDKDLENDSNRDFNNMQRLPHKRKAARRVEDTVTDQLLQGGEGAENFGMHPISSSAYDDKNTLKSVYNQEFTFCEKVKEKLRNSDDYQEFLKCLHIYSTEIITRPELQSLIGDLLGKYPDLMDGFNEFLTRCEKIDGFLAGVMSKKSLWSDGHSPRPMKAEDRDKERERERDERDKDRDRERERDRERERIDRNAAPAGHKVLFPNKDKYMAKPISELDLSNCQRCTPSYRLLPKNYPTPSASQRSELGAQVLNDFWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTTKRVEELLDKINDNTIKPDSPIRIEDHFTALNLRCIERLYGDHGLDVMDVLRKNATLALPVILTRLKQKQEEWSRCRSDFNKVWAEIYAKNYHKSLDHRSFYFKQQDTKSLSTKALLAEIKEINEKKRKEDDVLLAIAAGNRRPIIPNMEFEYSDSDIHEDLYQLIKYSCGEVCTNTEQLDKVMRIWTTFLEPILGVPPRPQGAEDTEDVVKAKSHVVKSCLGESDGSPGVEVAITNSKQLPASNEDDKPPEEASSSRARFVNGDTAREDGFHDVDQGARRNDNFGTTTQHGKVQNSISMADEVSGVNIQATSNGRPTEFNPSLAIRAEQSHGRTNMEITSGISTTPSRSSHAAVDGGLEPRLNNEALPSAEGGDSTKPVVSANGVMTEGTKVHRFREDPVGHFKIEREEGELSPNGDFEEDNFAVYGDAGMDAVPKAKDSAASRQYQARHGEEEEICCGEAGGENEADADDEGGESAQRSTEDSENASEAGEDVSGSESGDGECSREDHEEEEDVDHDDHDAKAESEGEAEGMADAHDVEGDSMLLPFSERFLLTVKPLAKHVPLALQDKEKKDSRIFYGNDSFYVLFRLHQTLYERIMSAKMNSSSVERKWRTSKDMSPSDLYARFMSALYNLLDGSADNTKFEDDCRAIIGTQSYVLFTLDKLIYKLVKQLQTVSTDEMDNKLLQLYTYERSRRQGRFIDLVYHENARVLLHDENIYRFECLSGPTLLVCPADGQWA* 1332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl11g00617 1331 FunFam Paired amphipathic helix SIN3-like protein 128 199 - -
Eupl11g00617 1331 Pfam Paired amphipathic helix repeat 152 196 IPR003822 GO:0006355
Eupl11g00617 1331 Pfam Paired amphipathic helix repeat 67 111 IPR003822 GO:0006355
Eupl11g00617 1331 Pfam Paired amphipathic helix repeat 375 419 IPR003822 GO:0006355
Eupl11g00617 1331 MobiDBLite consensus disorder prediction 440 488 - -
Eupl11g00617 1331 MobiDBLite consensus disorder prediction 854 871 - -
Eupl11g00617 1331 Gene3D Paired amphipathic helix 351 424 IPR036600 GO:0006355
Eupl11g00617 1331 MobiDBLite consensus disorder prediction 921 972 - -
Eupl11g00617 1331 ProSiteProfiles PAH domain profile. 129 199 IPR003822 GO:0006355
Eupl11g00617 1331 MobiDBLite consensus disorder prediction 445 486 - -
Eupl11g00617 1331 MobiDBLite consensus disorder prediction 1 43 - -
Eupl11g00617 1331 FunFam Paired amphipathic helix protein SIN3 351 424 - -
Eupl11g00617 1331 MobiDBLite consensus disorder prediction 1111 1126 - -
Eupl11g00617 1331 MobiDBLite consensus disorder prediction 829 885 - -
Eupl11g00617 1331 SUPERFAMILY PAH2 domain 353 420 IPR036600 GO:0006355
Eupl11g00617 1331 Gene3D Paired amphipathic helix 128 200 IPR036600 GO:0006355
Eupl11g00617 1331 FunFam Paired amphipathic helix protein Sin3 50 112 - -
Eupl11g00617 1331 ProSiteProfiles PAH domain profile. 353 422 IPR003822 GO:0006355
Eupl11g00617 1331 PANTHER SIN3B-RELATED 44 1314 IPR039774 GO:0003714
Eupl11g00617 1331 MobiDBLite consensus disorder prediction 1054 1126 - -
Eupl11g00617 1331 Coils Coil 258 285 - -
Eupl11g00617 1331 Gene3D Paired amphipathic helix 50 112 IPR036600 GO:0006355
Eupl11g00617 1331 SMART hdac_interact2seq4b 512 612 IPR013194 -
Eupl11g00617 1331 MobiDBLite consensus disorder prediction 921 943 - -
Eupl11g00617 1331 MobiDBLite consensus disorder prediction 201 319 - -
Eupl11g00617 1331 SUPERFAMILY PAH2 domain 43 113 IPR036600 GO:0006355
Eupl11g00617 1331 SUPERFAMILY PAH2 domain 125 198 IPR036600 GO:0006355
Eupl11g00617 1331 MobiDBLite consensus disorder prediction 213 319 - -
Eupl11g00617 1331 Pfam C-terminal domain of Sin3a protein 1170 1316 IPR031693 -
Eupl11g00617 1331 ProSiteProfiles PAH domain profile. 44 114 IPR003822 GO:0006355
Eupl11g00617 1331 Pfam Sin3 family co-repressor 514 606 IPR013194 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl11g00617 Eupl-Chr11 7835950 7849356 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl11g00617 21 148 WRKY Transcription Factor Family AT4G12020 50.000 1.24e-25 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Eupl11g00617 Sin3a_C 3.5e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl11g00617 K11644 - nnu:104596135 1953.72