Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl11g00606 ATGTCTTCCTTGTCTTCTTCGTTTTCAGAATCTGGAGCCAGGCATCATTCCTATAGCAGGAAACAGAAATCCCTCGGACTCTTGTGCACAAATTTCTTGAGCTTGTACAATCGGGCTGACGTTGAATCGATCGGATTGGATGACGCTGCGAGCCGATTAGGAGTCGAGCGGCGACGGATCTACGACATTGTCAACGTTTTGGAAAGCGTTGGAGTTCTGGTCAGGAAAGCGAAGAATCAGTACTCTTGGATAGGTTTTGGTGGAATCCCCAAGGCTGTAAATGAGCTTAAGGAAGAGGCTTTGAAGGAAAATAGCTTCAATATTTTCGATGCCACCACCAATGCCAAAGTTTTGGAGGACAATGGAGATGAAAGATCTTTCGATCAAAATAGTGCTAGTAGACAAGACAAACCAAGCCCTAGCTCTGTTCTCCTCAAACCTTCTTCATCCTCCAAAGTTGACAACAGAAGAGAAAAGTCTTTAGGACTTCTTACACAAAATTTCGTCAAGCTCTTCCTCTGCAGTGAGGCTGTTCTGATATCTCTTGATGATGCTGCTAGGATTTTGCTTGGCGACACCCACAATTCATCACTGATGCGAACAAAAGTGAGACGATTATATGACATTGCGAATGTGCTGTCTTCCATGAATCTCATTGAGAAGATCCGTCACATAGAGAGTAGGAAACCTGCATTCAGATGGTTGGGGGTTAATGAAAAATCAGAGAACAGATCTACCAGCTCTCTGGACTCAAAGAGAAGGGTATTTGGGACTGAGATAACAAACGCCAATTTTAAGAGGAAGAAGGTGGGTTCTTTGATTGATGAGAAACAAAACCAGAAGCTGGAGATGCAGATGAAATGTGAGGACTTGACAAATGTGATTGACCGCAACCGGACTCAACAGCAGCAGCAGTCAAAACAGAGCTCCAAGGGTGTTGTCTTTGGTCCTTTCAGTCCCGCCAGTCCGCCCAAAGATGGTGACACTGAAAAGCGCAATGTGAAAAGGGTTCAGGACTGGGAGAGCTTGGCCTCTTCCTATCGTCCTCAATATCACAACCAAGTGATTATAATAATTTTGAGTTTGTTACTGCCAAGATACTTCCAGAAATTGAAGGAGTAA 1122 0.4412 MSSLSSSFSESGARHHSYSRKQKSLGLLCTNFLSLYNRADVESIGLDDAASRLGVERRRIYDIVNVLESVGVLVRKAKNQYSWIGFGGIPKAVNELKEEALKENSFNIFDATTNAKVLEDNGDERSFDQNSASRQDKPSPSSVLLKPSSSSKVDNRREKSLGLLTQNFVKLFLCSEAVLISLDDAARILLGDTHNSSLMRTKVRRLYDIANVLSSMNLIEKIRHIESRKPAFRWLGVNEKSENRSTSSLDSKRRVFGTEITNANFKRKKVGSLIDEKQNQKLEMQMKCEDLTNVIDRNRTQQQQQSKQSSKGVVFGPFSPASPPKDGDTEKRNVKRVQDWESLASSYRPQYHNQVIIIILSLLLPRYFQKLKE* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl11g00606 373 Coils Coil 274 294 - -
Eupl11g00606 373 SUPERFAMILY "Winged helix" DNA-binding domain 158 237 IPR036390 -
Eupl11g00606 373 MobiDBLite consensus disorder prediction 299 315 - -
Eupl11g00606 373 Pfam E2F/DP family winged-helix DNA-binding domain 158 236 IPR003316 GO:0005667|GO:0006355
Eupl11g00606 373 Pfam E2F/DP family winged-helix DNA-binding domain 21 85 IPR003316 GO:0005667|GO:0006355
Eupl11g00606 373 MobiDBLite consensus disorder prediction 123 153 - -
Eupl11g00606 373 FunFam E2F transcription factor-like E2FE 151 238 - -
Eupl11g00606 373 PANTHER TRANSCRIPTION FACTOR E2F 7 352 IPR015633 GO:0000978|GO:0006357
Eupl11g00606 373 SUPERFAMILY "Winged helix" DNA-binding domain 19 84 IPR036390 -
Eupl11g00606 373 MobiDBLite consensus disorder prediction 132 150 - -
Eupl11g00606 373 SMART E2F_TDP_2 156 236 IPR003316 GO:0005667|GO:0006355
Eupl11g00606 373 SMART E2F_TDP_2 20 85 IPR003316 GO:0005667|GO:0006355
Eupl11g00606 373 Gene3D - 15 88 IPR036388 -
Eupl11g00606 373 Gene3D - 151 239 IPR036388 -
Eupl11g00606 373 MobiDBLite consensus disorder prediction 299 333 - -
Eupl11g00606 373 FunFam E2F transcription factor 8 15 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl11g00606 Eupl-Chr11 7737401 7740935 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl11g00606 15 361 E2F-DP Transcription Factor Family AT3G48160 55.114 4.75e-120 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Eupl11g00606 E2F_TDP 4.4e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl11g00606 K09391 - nnu:104607984 449.899